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	<title>Comments on: By Aligning Databases, Scientists Match Old Drugs with New Diseases</title>
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	<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/</link>
	<description>80beats is DISCOVER&#039;s news aggregator, weaving together the choicest tidbits from the best articles covering the day&#039;s most compelling topics.</description>
	<lastBuildDate>Wed, 23 May 2012 19:57:39 +0000</lastBuildDate>
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		<title>By: John M. Tax</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1518688</link>
		<dc:creator>John M. Tax</dc:creator>
		<pubDate>Mon, 29 Aug 2011 03:18:43 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1518688</guid>
		<description>I&#039;m sure that many of these drugs will produce headaches, diarrhea, blurred vision, memory loss, cancer - hey just like alcohol!  Let&#039;s do more research....

Big Pharma is not interested in cures whether patents are still in effect or not.  What profit is there in one pill cures?</description>
		<content:encoded><![CDATA[<p>I&#8217;m sure that many of these drugs will produce headaches, diarrhea, blurred vision, memory loss, cancer &#8211; hey just like alcohol!  Let&#8217;s do more research&#8230;.</p>
<p>Big Pharma is not interested in cures whether patents are still in effect or not.  What profit is there in one pill cures?</p>
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		<title>By: Nathan Woodhull</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1502278</link>
		<dc:creator>Nathan Woodhull</dc:creator>
		<pubDate>Fri, 26 Aug 2011 21:05:51 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1502278</guid>
		<description>What scares me the most is when drug companies urge doctors to write prescriptions for &quot;off label&quot;conditions.Doctors are now writing scripts for powerful anti-depressants for pain treatment.These drugs carry the most powerful warning called a&quot; black box&quot; warning and should not be allowed for any use other than what was originally intended without extensive research to uncover dammaging side effects.Unfortunately these powerful anti-depressants can also be prescribed by nurse practioners who cannot prescribe schedule two pain medications which are far less dangerous.</description>
		<content:encoded><![CDATA[<p>What scares me the most is when drug companies urge doctors to write prescriptions for &#8220;off label&#8221;conditions.Doctors are now writing scripts for powerful anti-depressants for pain treatment.These drugs carry the most powerful warning called a&#8221; black box&#8221; warning and should not be allowed for any use other than what was originally intended without extensive research to uncover dammaging side effects.Unfortunately these powerful anti-depressants can also be prescribed by nurse practioners who cannot prescribe schedule two pain medications which are far less dangerous.</p>
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		<title>By: Les</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1494297</link>
		<dc:creator>Les</dc:creator>
		<pubDate>Thu, 25 Aug 2011 23:55:42 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1494297</guid>
		<description>Interesting and scarey.  Once again, this points out that we really don&#039;t know what all these drugs are doing in our system, yet Americans down them by the handful.  Another venue the Epigenetics researchers ought to look at.</description>
		<content:encoded><![CDATA[<p>Interesting and scarey.  Once again, this points out that we really don&#8217;t know what all these drugs are doing in our system, yet Americans down them by the handful.  Another venue the Epigenetics researchers ought to look at.</p>
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		<title>By: rork</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1463042</link>
		<dc:creator>rork</dc:creator>
		<pubDate>Mon, 22 Aug 2011 17:00:28 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1463042</guid>
		<description>Gene Expression Omnibus (GEO) reliability varies from series to series.  Some of the data sets are outstanding and famous and everything you hoped for, others are not-so-useful (perhaps small sample size or few transcripts measured), and some are not good.  All hail the good people that run GEO though - it is vital for research.

I might add that half the fun of using the other data base (I hate calling it the connectivity map) is that the top compounds you obtain might show a pattern, such as too many being antagonists of a certain pathway.  (I actually want database or software to help find that pattern, since it is hard on a nerd to look at a list of compounds and have a eureka moment about where their mechanisms share some property.)  It&#039;s telling you to start looking at that pathway harder.  Often you knew that already, but sometimes not.</description>
		<content:encoded><![CDATA[<p>Gene Expression Omnibus (GEO) reliability varies from series to series.  Some of the data sets are outstanding and famous and everything you hoped for, others are not-so-useful (perhaps small sample size or few transcripts measured), and some are not good.  All hail the good people that run GEO though &#8211; it is vital for research.</p>
<p>I might add that half the fun of using the other data base (I hate calling it the connectivity map) is that the top compounds you obtain might show a pattern, such as too many being antagonists of a certain pathway.  (I actually want database or software to help find that pattern, since it is hard on a nerd to look at a list of compounds and have a eureka moment about where their mechanisms share some property.)  It&#8217;s telling you to start looking at that pathway harder.  Often you knew that already, but sometimes not.</p>
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		<title>By: Pippa</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1456245</link>
		<dc:creator>Pippa</dc:creator>
		<pubDate>Sun, 21 Aug 2011 16:48:31 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1456245</guid>
		<description>Thanks amphiox - exactly. AND this is why it is so important that we look at our political system and ensure that large companies, including but not limited to pharma, are less able to influence political decisions. Otherwise they will continue to fund political parties and hence undermine democracy through the resulting influence that this purchases. Our politicians have to be pragmatic and vote for what is good for their sponsors, rather than what is needed for the electorate. Pharma does not want lots of publicly funded research. As a business their job is to reduce competition and maximise gains for shareholders. If we, as a people, allow the rules of politics and commerce that lead to this mess we have no one but ourselves to blame. We are, after all, still pretty much a democracy!</description>
		<content:encoded><![CDATA[<p>Thanks amphiox &#8211; exactly. AND this is why it is so important that we look at our political system and ensure that large companies, including but not limited to pharma, are less able to influence political decisions. Otherwise they will continue to fund political parties and hence undermine democracy through the resulting influence that this purchases. Our politicians have to be pragmatic and vote for what is good for their sponsors, rather than what is needed for the electorate. Pharma does not want lots of publicly funded research. As a business their job is to reduce competition and maximise gains for shareholders. If we, as a people, allow the rules of politics and commerce that lead to this mess we have no one but ourselves to blame. We are, after all, still pretty much a democracy!</p>
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		<title>By: Brian Too</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1442949</link>
		<dc:creator>Brian Too</dc:creator>
		<pubDate>Fri, 19 Aug 2011 23:08:39 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1442949</guid>
		<description>I thought that new uses for old drugs were patentable?  In fact, I had understood that merely re-packaging or compounding old drugs also resulted in new patent opportunities?</description>
		<content:encoded><![CDATA[<p>I thought that new uses for old drugs were patentable?  In fact, I had understood that merely re-packaging or compounding old drugs also resulted in new patent opportunities?</p>
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		<title>By: Iain</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1437737</link>
		<dc:creator>Iain</dc:creator>
		<pubDate>Fri, 19 Aug 2011 01:54:32 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1437737</guid>
		<description>To me this is an interesting side note
If drugs can have some interesting beneficial unlooked for effects, could this not be said for un-beneficial effects unlooked for in common food additives?  Doesn&#039;t it warrant investigation?</description>
		<content:encoded><![CDATA[<p>To me this is an interesting side note<br />
If drugs can have some interesting beneficial unlooked for effects, could this not be said for un-beneficial effects unlooked for in common food additives?  Doesn&#8217;t it warrant investigation?</p>
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		<title>By: Iain</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1437713</link>
		<dc:creator>Iain</dc:creator>
		<pubDate>Fri, 19 Aug 2011 01:50:17 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1437713</guid>
		<description>Americans pay more for drugs, daily, than the rest of the world, thanks to big pharma and their patents.</description>
		<content:encoded><![CDATA[<p>Americans pay more for drugs, daily, than the rest of the world, thanks to big pharma and their patents.</p>
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		<title>By: amphiox</title>
		<link>http://blogs.discovermagazine.com/80beats/2011/08/18/by-aligning-databases-scientists-match-old-drugs-with-new-diseases/comment-page-1/#comment-1436122</link>
		<dc:creator>amphiox</dc:creator>
		<pubDate>Thu, 18 Aug 2011 20:52:01 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/80beats/?p=31269#comment-1436122</guid>
		<description>&lt;blockquote&gt;Unfortunately, through a quirk of the incentive system in pharmaceuticals, it’s unlikely that companies that first developed these drugs will invest the time and money required to test them for new uses: their patents have expired, so the companies don’t stand to profit from it.&lt;/blockquote&gt;

And this is what robust publicly funding research is for, and why it is important.</description>
		<content:encoded><![CDATA[<blockquote><p>Unfortunately, through a quirk of the incentive system in pharmaceuticals, it’s unlikely that companies that first developed these drugs will invest the time and money required to test them for new uses: their patents have expired, so the companies don’t stand to profit from it.</p></blockquote>
<p>And this is what robust publicly funding research is for, and why it is important.</p>
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