<?xml version="1.0" encoding="UTF-8"?><rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
		>
<channel>
	<title>Comments on: Arise the vehicle! Arise the cell!</title>
	<atom:link href="http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/feed/" rel="self" type="application/rss+xml" />
	<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/</link>
	<description></description>
	<lastBuildDate>Tue, 21 May 2013 14:03:00 +0000</lastBuildDate>
	<sy:updatePeriod>hourly</sy:updatePeriod>
	<sy:updateFrequency>1</sy:updateFrequency>
	<generator>http://wordpress.org/?v=3.4.2</generator>
	<item>
		<title>By: Steve Talbott</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26589</link>
		<dc:creator>Steve Talbott</dc:creator>
		<pubDate>Sun, 17 Oct 2010 12:42:26 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26589</guid>
		<description>In order to avoid further petty criticism, I should add that the nucleosome &quot;spool&quot; is more formally referred to as the nucleosome &quot;core particle&quot;, and that the structure Luger is commonly said to have determined is that of the core particle.  (Her paper was entitled, &quot;Crystal structure of the nucleosome core particle at 2.8 Å resolution&quot;.)  However, she said a good deal about the DNA as well.  And, for whatever it&#039;s worth, the image from her that I used in my article shows the DNA double helix, in stick-figure representation, wrapped around the spool.</description>
		<content:encoded><![CDATA[<p>In order to avoid further petty criticism, I should add that the nucleosome &#8220;spool&#8221; is more formally referred to as the nucleosome &#8220;core particle&#8221;, and that the structure Luger is commonly said to have determined is that of the core particle.  (Her paper was entitled, &#8220;Crystal structure of the nucleosome core particle at 2.8 Å resolution&#8221;.)  However, she said a good deal about the DNA as well.  And, for whatever it&#8217;s worth, the image from her that I used in my article shows the DNA double helix, in stick-figure representation, wrapped around the spool.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Steve Talbott</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26588</link>
		<dc:creator>Steve Talbott</dc:creator>
		<pubDate>Sat, 16 Oct 2010 23:25:44 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26588</guid>
		<description>DK quotes from my article in The New Atlantis, &quot;Getting Over the Code Delusion&quot;:

“… nucleosomes as spools around which DNA is wrapped”, “a nucleosome spool with DNA wrapped around it” – when the guy can’t even get the correct definition of something he makes central in the article, what are the chances that there will be anything interesting there? Sheesh.

This is rather disgusting.  First, DK does not make his point clear.  Second, he proceeds from this unclarity to a condescending dismissal.  And third, he is wrong if he is saying there is some sort of inconsistency in the phrases quoted.  Karolin Luger, who first published the nucleosome structure, happened to remark in one of her later papers about the common misuse of the term &quot;nucleosome&quot;, mentioning that &quot;the nucleosome actually *includes* the DNA&quot;.  Both of my remarks can and should be read as reflecting that understanding.  I refer to nucleosomes as &quot;spools around which the DNA is wrapped&quot;, and I refer to the nucleosome spool &quot;with DNA wrapped around it&quot;.  Finally, even if my language embodied the confusion rampant in the technical literature, it would hardly be a matter worth mentioning, for the same reason Luger doesn&#039;t harp on the point: people don&#039;t have much difficulty understanding what is being said.  Why trivialize the discussion?</description>
		<content:encoded><![CDATA[<p>DK quotes from my article in The New Atlantis, &#8220;Getting Over the Code Delusion&#8221;:</p>
<p>“… nucleosomes as spools around which DNA is wrapped”, “a nucleosome spool with DNA wrapped around it” – when the guy can’t even get the correct definition of something he makes central in the article, what are the chances that there will be anything interesting there? Sheesh.</p>
<p>This is rather disgusting.  First, DK does not make his point clear.  Second, he proceeds from this unclarity to a condescending dismissal.  And third, he is wrong if he is saying there is some sort of inconsistency in the phrases quoted.  Karolin Luger, who first published the nucleosome structure, happened to remark in one of her later papers about the common misuse of the term &#8220;nucleosome&#8221;, mentioning that &#8220;the nucleosome actually *includes* the DNA&#8221;.  Both of my remarks can and should be read as reflecting that understanding.  I refer to nucleosomes as &#8220;spools around which the DNA is wrapped&#8221;, and I refer to the nucleosome spool &#8220;with DNA wrapped around it&#8221;.  Finally, even if my language embodied the confusion rampant in the technical literature, it would hardly be a matter worth mentioning, for the same reason Luger doesn&#8217;t harp on the point: people don&#8217;t have much difficulty understanding what is being said.  Why trivialize the discussion?</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Friday fare &#124; Code for Life</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26587</link>
		<dc:creator>Friday fare &#124; Code for Life</dc:creator>
		<pubDate>Fri, 08 Oct 2010 02:38:17 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26587</guid>
		<description>[...] has broken out over at Gene Expression. I’m enjoying this series of articles, because it’s an area the interests me greatly. Larry Morgan at Sandwalk has his (more [...] </description>
		<content:encoded><![CDATA[<p>[...] has broken out over at Gene Expression. I’m enjoying this series of articles, because it’s an area the interests me greatly. Larry Morgan at Sandwalk has his (more [...] </p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Epigenetics &#8211; what revolution? &#124; Gene Expression &#124; Discover Magazine</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26586</link>
		<dc:creator>Epigenetics &#8211; what revolution? &#124; Gene Expression &#124; Discover Magazine</dc:creator>
		<pubDate>Thu, 07 Oct 2010 08:06:20 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26586</guid>
		<description>[...] more clearly what is probably close to my own position (though he is far more well informed) in the comments below. I think it&#8217;s worth [...] </description>
		<content:encoded><![CDATA[<p>[...] more clearly what is probably close to my own position (though he is far more well informed) in the comments below. I think it&#8217;s worth [...] </p>
]]></content:encoded>
	</item>
	<item>
		<title>By: biologist</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26585</link>
		<dc:creator>biologist</dc:creator>
		<pubDate>Thu, 07 Oct 2010 07:30:38 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26585</guid>
		<description>As far as I can tell, the existence of epigenetic mechanisms doesn&#039;t change anything that we *should* have already known about the social implications of genetics (i.e. what people care about).

Quantitative genetic methods that estimate a substantial contribution of genetic variation to phenotypic variation do not now and has never told us anything about actual or counterfactual causal mechanisms involved. They have also never told us much about development other than what we already knew must be true -- there will be genes involved in some way.

Nothing we&#039;ve learned in the last 30 years about molecular biology makes any difference at a general level to those conclusions. What it mostly does is make clearer that the causal mechanisms behind phenotypic variation in complex traits are probably themselves really really complex.

As soon as you realize that complex traits have non-Mendelian inheritance patterns -- something that&#039;s been abundantly clear for many many decades -- everything else follows and epigenetics only adds new dimensions to the causal mechanisms that might be involved.

Whether a trait is amenable to manipulation (and at what stages of development) is an interesting and very challenging question, but there&#039;s no revolution in our understanding of biology involved in asking it. The only way to see a revolution is to ignore all of the incremental changes in understanding that have happened between decades.</description>
		<content:encoded><![CDATA[<p>As far as I can tell, the existence of epigenetic mechanisms doesn&#8217;t change anything that we *should* have already known about the social implications of genetics (i.e. what people care about).</p>
<p>Quantitative genetic methods that estimate a substantial contribution of genetic variation to phenotypic variation do not now and has never told us anything about actual or counterfactual causal mechanisms involved. They have also never told us much about development other than what we already knew must be true &#8212; there will be genes involved in some way.</p>
<p>Nothing we&#8217;ve learned in the last 30 years about molecular biology makes any difference at a general level to those conclusions. What it mostly does is make clearer that the causal mechanisms behind phenotypic variation in complex traits are probably themselves really really complex.</p>
<p>As soon as you realize that complex traits have non-Mendelian inheritance patterns &#8212; something that&#8217;s been abundantly clear for many many decades &#8212; everything else follows and epigenetics only adds new dimensions to the causal mechanisms that might be involved.</p>
<p>Whether a trait is amenable to manipulation (and at what stages of development) is an interesting and very challenging question, but there&#8217;s no revolution in our understanding of biology involved in asking it. The only way to see a revolution is to ignore all of the incremental changes in understanding that have happened between decades.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Razib Khan</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26584</link>
		<dc:creator>Razib Khan</dc:creator>
		<pubDate>Thu, 07 Oct 2010 00:33:01 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26584</guid>
		<description>&lt;i&gt;&quot;... nucleosomes as spools around which DNA is wrapped&quot;, &quot;a nucleosome spool with DNA wrapped around it&quot; - when the guy can&#039;t even get the correct definition of something he makes central in the article, what are the chances that there will be anything interesting there? Sheesh.&lt;/i&gt;

 that&#039;s why i say &lt;b&gt;link&lt;/b&gt; to the definitions of molecular biological stuff. let someone else take the fall if there&#039;s an error.</description>
		<content:encoded><![CDATA[<p><i>&#8220;&#8230; nucleosomes as spools around which DNA is wrapped&#8221;, &#8220;a nucleosome spool with DNA wrapped around it&#8221; &#8211; when the guy can&#8217;t even get the correct definition of something he makes central in the article, what are the chances that there will be anything interesting there? Sheesh.</i></p>
<p> that&#8217;s why i say <b>link</b> to the definitions of molecular biological stuff. let someone else take the fall if there&#8217;s an error.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: DK</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26583</link>
		<dc:creator>DK</dc:creator>
		<pubDate>Wed, 06 Oct 2010 23:34:52 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26583</guid>
		<description>&lt;i&gt;he wants to dethrone the centrality of the genetic sequence in our understanding of how life is specified&lt;/i&gt;

When someone attempts that, it&#039;s not a bad idea for that someone to familiarize himself with basic concepts and terms to start with.

&quot;... nucleosomes as spools around which DNA is wrapped&quot;, &quot;a nucleosome spool with DNA wrapped around it&quot; - when the guy can&#039;t even get the correct definition of something he makes central in the article, what are the chances that there will be anything interesting there? Sheesh.</description>
		<content:encoded><![CDATA[<p><i>he wants to dethrone the centrality of the genetic sequence in our understanding of how life is specified</i></p>
<p>When someone attempts that, it&#8217;s not a bad idea for that someone to familiarize himself with basic concepts and terms to start with.</p>
<p>&#8220;&#8230; nucleosomes as spools around which DNA is wrapped&#8221;, &#8220;a nucleosome spool with DNA wrapped around it&#8221; &#8211; when the guy can&#8217;t even get the correct definition of something he makes central in the article, what are the chances that there will be anything interesting there? Sheesh.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Tweets that mention Arise the vehicle! Arise the cell! &#124; Gene Expression &#124; Discover Magazine -- Topsy.com</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26582</link>
		<dc:creator>Tweets that mention Arise the vehicle! Arise the cell! &#124; Gene Expression &#124; Discover Magazine -- Topsy.com</dc:creator>
		<pubDate>Wed, 06 Oct 2010 23:17:33 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26582</guid>
		<description>[...] This post was mentioned on Twitter by razib khan, Ron Simon, Geoffrey Dyson, CHALCHIHUITES, Al Poe and others. Al Poe said: Arise the vehicle! Arise the cell! &#124; Gene Expression: A quick follow up to my post Epigenetics arise! Adam Keiper,... http://bit.ly/9e5uwJ [...] </description>
		<content:encoded><![CDATA[<p>[...] This post was mentioned on Twitter by razib khan, Ron Simon, Geoffrey Dyson, CHALCHIHUITES, Al Poe and others. Al Poe said: Arise the vehicle! Arise the cell! | Gene Expression: A quick follow up to my post Epigenetics arise! Adam Keiper,&#8230; <a href="http://bit.ly/9e5uwJ" rel="nofollow">http://bit.ly/9e5uwJ</a> [...] </p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Steve Sailer</title>
		<link>http://blogs.discovermagazine.com/gnxp/2010/10/arise-the-vehicle-arise-the-cell/#comment-26581</link>
		<dc:creator>Steve Sailer</dc:creator>
		<pubDate>Wed, 06 Oct 2010 23:14:57 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/gnxp/?p=6960#comment-26581</guid>
		<description>It&#039;s hard for people to keep straight in their head the difference between &quot;A influences B&quot; and &quot;A determines B.&quot;</description>
		<content:encoded><![CDATA[<p>It&#8217;s hard for people to keep straight in their head the difference between &#8220;A influences B&#8221; and &#8220;A determines B.&#8221;</p>
]]></content:encoded>
	</item>
</channel>
</rss>
