Yale and Rockefeller U: This Week In Talk

Having emerged from my turkey-induced coma, I have regained my powers of speech and am ready for two talks I’ve got this week

Monday (today, December 1), I’ll be talking about science writing at a Master’s Tea at Saybrook College at Yale University at 4. It’s open to Yale students and faculty.

On Thursday at 7 pm I’ll be talking at Rockefeller University in Manhattan, as part of the NYC Skeptics Public Lecture Series. The title of the talk is “The Darwin Beat.” Here are more details. Admission is free.

Hope to see some Loom readers there…

December 1st, 2008 2:12 AM by Carl Zimmer in Talks | No Comments »

The Carbon Carousel

On bloggingheads.tv, I talk to Tyler Volk about the beautiful, dangerous carbon cycle. Check it out.

November 23rd, 2008 4:11 PM by Carl Zimmer in Global Warming, Talks | 1 Comment »

A Catastrophic Career

filename.jpgLast night I strapped on a bow tie and shot out my tuxedo cuffs, got in the car, and headed to the upper West Side to celebrate a global cataclysm. Actually, I was helping to celebrate the geologist who discovered the cataclysm. Walter Alvarez was receiving the Vetlesen Prize, the highest honor in the earth sciences.

Under the magnificent rotunda at Columbia’s Low Library, we sat down to dinner. Michael Purdy, the director of Columbia’s Lamont-Doherty Geological Observatory, kicked off the event by explaining that Alvarez was winning the award because he had changed the way earth scientists view the history of the Earth. Later, Columbia president Lee Bollinger got up to present him with the award, declaring that Alvarez had shown how life was intimately connected to the cosmos. The real highlight of the evening, however, was listening to Alvarez himself.

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November 22nd, 2008 5:11 PM by Carl Zimmer in General, Writing Elsewhere | 4 Comments »

Going Black Tie with the Rock Hounds

My experience with tuxedos has been limited to proms and weddings up until now, but today I’m renting a penguin suit for a most unexpected event: the geological equivalent of the Nobel Prize. Bet you didn’t know there was one! Actually, the Vetlesen Prize has been awarded every few years since 1959. This year’s winner is Walter Alvarez, who discovered the first clues that an asteroid plowed into the Earth 65 million years ago. The discovery was not just cool in and of itself, but changed the way scientists think about how surprising physical events can alter the course of evolution. I’ve spoken once to Alvarez on the phone, traded some email, and written the foreword to the new edition of his book, T. Rex and the Crater of Doom. So I’m excited to be suiting up today. I don’t think live-blogging is appropriate to the event, but I’ll report back once I’ve returned to civilian gear.

Image: The Vetlesen Prize site

November 21st, 2008 10:11 AM by Carl Zimmer in General, Writing Elsewhere | 6 Comments »

The Further Adventures of the Emerald Green Sea Slug

A couple days I introduced an awesome sea slug that eats algae and uses them to become photosynthetic. I thought it would be worth revisiting this marvelously plant-like animal for a couple reasons. One is that I’d like an excuse to post this excellent photo, which is on the cover of the latest issue of the Proceedings of the National Academy of Sciences, where a new paper on the sea slug is being published (photo by Mary Tyler). Another reason is that I wanted to relay an email exchange I had with the lead scientist on the study, Mary Rumpho.

Rumpho discovered that the sea slug has incorporated a key gene for photosynthesis from the algae into its own DNA. That means that the slugs don’t just passively let the photosynthesizing structures from the algae (called plastids) harness sunlight. The slugs themselves actually make proteins that are essential for photosynthesis.

I wondered how in the world a gene from algae got into the slug’s own DNA. Rumpho responded (my notes in brackets):

Our thoughts are that the nuclei break open as they go through the guy, releasing their DNA. The DNA is then phagocytosed [eaten] along with the chloroplasts into cells lining the digestive system. The digestive system expands throughout the growing sea slug and interestingly it is found to branch right next to the reproductive organs. In addition, the invertebrate has an open “blood” system, so if the DNA was exchanged from the gut into the blood, it also would come in direct contact with the reproductive organs.

We are doing high-throughput sequencing now on the sea slug transcriptome [the genes expressed in specific cells] and hopefully soon, the genome, so we should learn a lot more about which genes are there.  I will also mention that we frequently/always? find a virus in the sea slug that really takes off as the sea slugs age. We believe it might be a retro-virus, but the support is not strong at this time.  It’s possible the DNA is moving via a viral vector through the blood to the germ line.

Yet another example of a discovery in evolution leading to a new hypothesis, leading in turn to a new experiment. And yet another wrinkle for Hollywood to consider (alien race of plant people who evolved photosynthesis when a deadly virus picked up DNA from their salads inserted it into their DNA…you get the idea…)

November 18th, 2008 6:11 PM by Carl Zimmer in Evolution | 12 Comments »

Attention, Philadelphia: We’re Invading Your Brain

If you’d like to learn about some of the latest discoveries about the brain and find out where neuroscience is headed, please join me at the Franklin Institute in Philadelphia on Wednesday. I’ll be moderating a panel discussion packed with prominent neuroscientists. Here are the details:

The Franklin Institute, Discover Magazine and the National Science Foundation present a fascinating neuroscience symposium.

“Unlocking the Secrets and Powers of the Brain.”
Date: November 19
Time: 7:00pm
Event location: Franklin Theater
Admission: Free with advanced registration, please call 215.448.1254

Moderated by award-winning journalist Carl Zimmer, the discussion features Dan Levitin (best-selling author of This is Your Brain On Music), Michael Gazzaniga (Director for the SAGE Center for the Study of Mind at UC Santa Barbara), Rebecca Saxe (Assistant Professor of Cognitive Neuroscience at MIT), Sam Wang (Welcome to Your Brain) and Ron Mangun (Interim Dean of Social Sciences, a Professor of Psychology and Neurology, and the Director of the Center for Mind and Brain at the UC Davis). A book signing will follow.

November 17th, 2008 7:11 AM by Carl Zimmer in Brains, Talks | 4 Comments »

Bike Science

bike-science.jpg

Andy writes:

This is all your fault, you know: a bike-riding forum I hang out on had a “check out these science tattoos!” thread, and it got me to thinking: what bicycle science tats are there?  I’d just celebrated my 25th year
in the saddle and was jonesing for some ink.

For ages I struggled to find something that abstracted the kinetics of bikes down to a couple of lines - with no success.

Then I found the power equation in MIT’s _Bicycling Science_ (and Wikipedia).  It describes the power needed to propel a bike against our everyday foes: gravity, weight, friction, wind resistance.  And it describes beautifully the way that the linear components of the resistance give over to the fat slamming wall of wind resistance.

So, of course, I got it tattooed on my calf.   :)

Thanks for the album.  The passion of nerds is just as intense as the passion of everyday folks, and it’s great to see more of ‘em out there.

Carl: We have crossed a threshold here at the Science Tattoo Emporium. People used to get tattoos, then find out about the Emporium. Now the reverse is happening. So let me take this moment to say that I take no blame if this emporium (and perhaps a glass or two of Frangelico) prompts anyone to get a science-related tattoo they regret the next day. Of course, if you like the results–send them here.

Click here to go to the full Science Tattoo Emporium.

November 15th, 2008 4:11 PM by Carl Zimmer in Science Tattoo Emporium | 3 Comments »

Dabbling with the Future: A Slideshow of My Latest Talk

I just spoke yesterday about Microcosm, and brought a little recorder with me. This afternoon I fooled around with Soundslide and my Powerpoint, and produced this video. This is a format I’d like to experiment with more on this blog, so I’d be grateful if people would take a gander and offer their thoughts. The sound is a little scratchy (and a nearby fire company tested out their siren just as I was starting my talk), but all in all it should be easy listening.

November 14th, 2008 4:11 PM by Carl Zimmer in Microcosm: The Book, Talks | 9 Comments »

Going Green

green-slug.jpgMemo to Sci-Fi Movie Development Dept.

Re: Plant People Concept

Here are the specifics for the aliens in our next movie, VOYAGE TO THE PLANET OF THE PLANT PEOPLE. The people there are vegetarians, eating salads, seaweed drinks, etc. They are green, because when they digest their meals, their bodies move some of the plant matter to their skin. They use it to capture energy from the sun through photosynthesis. So the aliens sit outside in the sun a lot, getting lots of energy and growing to huge sizes, which is why they’re so hard to kill when Earthlings show up. I see the people from Blue Man Group–just add some yellow and we’re set. Or maybe William Dafoe?

Behold, Hollywood, the sea slug Elysia chlorotica. This emerald green slug grazes on algae. As it breaks down the algae, it preserves their photosynthetic structures, called plastids. The plastids are shipped to the surface of its body, where they can continue to photosynthesize. The slug thus makes a living as plants do. And it turns a beautiful shade of green along the way.

Recently, some scientists discovered that the sea slug is even more plantlike than previously thought thought. They wondered if some genes from the algae the slug ate had become incorporated into their own DNA. This movement of genes is called horizontal gene transfer. It’s common among bacteria, which swap genes for antibiotic resistance and such. It’s not as common among multicellular creatures, but it has happened a number of times. For example, our ancestors swallowed up bacteria that eventually became our mitochondria, the structures in our cells that use oxygen to generate energy. Mitochondria still have some of their own bacterial genes, and other bacterial genes have moved into our own DNA. The ancestors of green algae and plants swallowed up photosynthetic bacteria and harnessed their ability to photosynthesize. Those bacteria became plastids. The p of the genes from the plastids are now part of the DNA of plants.

Mary Rumpho of the University of Maine and her colleagues suspected that something like this had happened to the sea slugs. They were struck by the fact that the plastids continue to function in the slugs for months after they’ve been extracted from algae. But plastids normally can’t function on their own. They need help from proteins encoded by genes that are now carried in the algae’s DNA. It was possible that the slugs were making the proteins for their plastids.

So Rumpho’s group gathered up some sea slugs off the coast of Martha’s Vineyard and took a look at their DNA. They also took a look at the DNA of the one species of algae that the slugs put in their skin. As they suspected, the plasmids don’t have all the genes necessary for photosynthesis. The scientists discovered a crucial photosynthesis gene, called psbO, in the DNA of the slug. In fact, the sequence of the slug’s psbO gene is identical to the one in the species of algae that supplies them with their plastids.

Now that scientists can peer into genomes without too much difficulty, they’re probably going to find a lot of these gene transfers, and some of them are going to turn out to be big leaps–like the jump from the plant kingdom to the animal kingdom.  What I want to know is how a photosynthesis gene from the nucleus of algae got integrated into the DNA of the slug that eats it. I also want to know why other plant-eating animals didn’t merge with their food as well. Why aren’t sheep green? And finally, when will Voyage to the Planet of the Plant People wrap up?

Until then, you can enjoy Rumpho’s great web site dedicated to this symbiosis–complete with slug videos.

November 14th, 2008 3:11 PM by Carl Zimmer in Evolution | 12 Comments »

Battle of the Parents On the Air

Just spoke today on New Hampshire Public Radio about my latest Discover column on the battle between the parents. Listen here.

November 13th, 2008 6:11 PM by Carl Zimmer in Evolution, Talks | No Comments »

If Life Gets Boring…

…you can steer away from this biology-based blog and towards the newest addition to the Discover blog stable: Cosmic Variance. I’m a long-time fan of this cabal of highly literate physicists, and I welcome them here.

November 13th, 2008 3:11 PM by Carl Zimmer in General | 5 Comments »

You Want A Piece of This? (Please Please Please Don’t Take a Piece of This!)

fiddler-crap-600.jpgNature lies.

Organisms send signals to each other, and often those signals are honest–in other words, when another organism receives the signal, it can reliably use it to figure something out about the sender. Male fiddler crabs, like the one shown here, send a big, loud signal with their oversized claw. Often, that signal essentially says, “Do not mess with me.” And in many cases, that’s good advice.

Sometimes, though, it’s a major bluff.

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November 13th, 2008 11:11 AM by Carl Zimmer in Evolution | 4 Comments »