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	<title>Comments on: Cornell Gets Infected Tomorrow</title>
	<atom:link href="http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/feed/" rel="self" type="application/rss+xml" />
	<link>http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/</link>
	<description>A blog about life, past and future. Written by DISCOVER contributing editor and columnist Carl Zimmer.</description>
	<lastBuildDate>Mon, 13 Feb 2012 19:00:24 +0000</lastBuildDate>
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		<title>By: Dave Matthews</title>
		<link>http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/comment-page-1/#comment-4062</link>
		<dc:creator>Dave Matthews</dc:creator>
		<pubDate>Thu, 09 Nov 2006 04:26:58 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/#comment-4062</guid>
		<description>Great talk today!

The most interesting part scientifically was the question about which of a
parasite&#039;s traits are evolutionarily adaptive and which are only incidental.
The blind watchmaker&#039;s watch vs. the spandrel.

The most powerful approach to this question is genetics.  Knock out or
modify the trait genetically (or find natural genetic variations), and test
whether it affects the parasitic interaction.

This approach is quite easy to do in some cases, but not (yet) in most of
the fascinating examples you discussed.  It&#039;s easier for bacterial and viral
parasites (aka pathogens, same thing).  Primarily because their short
generation times allow accelerated evolution.  In addition some viruses like
influenza have high mutation rates and correspondingly large numbers of
progeny per generation.  John Barry&#039;s &lt;a href=&quot;http://www.jhsph.edu/publichealthnews/articles/2005/great_influenza.html&quot; rel=&quot;nofollow&quot;&gt;The
Great Influenza&lt;/a&gt; is excellent about influenza virus evolution.

You didn&#039;t mention the evolution of hosts in response to the parasites.
(It was only an hour&#039;s talk.)  For example the selection of hemoglobin genes
resistant to malaria&#039;s sickle-cell-anemia effects.  In the world of plant
parasites there are fascinating examples of &quot;gene-for-gene&quot; coevolution, one
resistance gene in the host corresponding to each of the parasite&#039;s genes for
virulence, and vice versa, a coevolutionary arms war.  This is an ongoing
coevolution in real time, year to year.  Right now &lt;a href=&quot;http://wheat.pw.usda.gov/GG2/rust.shtml&quot; rel=&quot;nofollow&quot;&gt;a new mutation in the wheat
parasite, stem rust&lt;/a&gt;, threatens to spread worldwide before plant breeders
can find and deploy a resistance gene to prevent devastation.  Norman Borlaug
and millions of research dollars are involved in this effort.</description>
		<content:encoded><![CDATA[<p>Great talk today!</p>
<p>The most interesting part scientifically was the question about which of a<br />
parasite&#8217;s traits are evolutionarily adaptive and which are only incidental.<br />
The blind watchmaker&#8217;s watch vs. the spandrel.</p>
<p>The most powerful approach to this question is genetics.  Knock out or<br />
modify the trait genetically (or find natural genetic variations), and test<br />
whether it affects the parasitic interaction.</p>
<p>This approach is quite easy to do in some cases, but not (yet) in most of<br />
the fascinating examples you discussed.  It&#8217;s easier for bacterial and viral<br />
parasites (aka pathogens, same thing).  Primarily because their short<br />
generation times allow accelerated evolution.  In addition some viruses like<br />
influenza have high mutation rates and correspondingly large numbers of<br />
progeny per generation.  John Barry&#8217;s <a href="http://www.jhsph.edu/publichealthnews/articles/2005/great_influenza.html" rel="nofollow">The<br />
Great Influenza</a> is excellent about influenza virus evolution.</p>
<p>You didn&#8217;t mention the evolution of hosts in response to the parasites.<br />
(It was only an hour&#8217;s talk.)  For example the selection of hemoglobin genes<br />
resistant to malaria&#8217;s sickle-cell-anemia effects.  In the world of plant<br />
parasites there are fascinating examples of &#8220;gene-for-gene&#8221; coevolution, one<br />
resistance gene in the host corresponding to each of the parasite&#8217;s genes for<br />
virulence, and vice versa, a coevolutionary arms war.  This is an ongoing<br />
coevolution in real time, year to year.  Right now <a href="http://wheat.pw.usda.gov/GG2/rust.shtml" rel="nofollow">a new mutation in the wheat<br />
parasite, stem rust</a>, threatens to spread worldwide before plant breeders<br />
can find and deploy a resistance gene to prevent devastation.  Norman Borlaug<br />
and millions of research dollars are involved in this effort.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Dave Matthews</title>
		<link>http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/comment-page-1/#comment-4061</link>
		<dc:creator>Dave Matthews</dc:creator>
		<pubDate>Thu, 09 Nov 2006 03:59:56 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/#comment-4061</guid>
		<description>Parasitic plants are another topic you didn&#039;t have time to mention.  &lt;a href=&quot;http://www-biol.paisley.ac.uk/bioref/Tracheophyta/Orobanche.html&quot; rel=&quot;nofollow&quot;&gt;&lt;i&gt;Orobanche&lt;/i&gt;,
the broomrape&lt;/a&gt;, is amazing.  A snapdragon with no leaves, nothing
green, just the showy flower spike and an organ that saps all its nutrition
from the host (tomato, sunflower, others).

How does a parasitic plant find its victims, the hosts for its next
generation?  Each &lt;i&gt;Orobanche&lt;/i&gt; flower makes thousands of tiny seeds,
nearly microscopic.  These seeds sift down into the soil and wait.  For
years.  Until a root of their host plant grows very close, ca. 2 mm.  Not
until then will the seed germinate, detecting a specific chemical exuded from
the root.  The minuscule germinated root invades the host&#039;s root, and by
summer there&#039;s a fine &lt;i&gt;Orobanche&lt;/i&gt; flower spike and a very sick tomato.

&lt;i&gt;Orobanche&lt;/i&gt; is an economically important parasite in
some places, e.g. for tomato in Israel and chickpea in southern Europe.  A
related species, &lt;a href=&quot;http://en.wikipedia.org/wiki/Striga_%28plant%29&quot; rel=&quot;nofollow&quot;&gt;&lt;i&gt;Striga&lt;/i&gt;
(witchweed)&lt;/a&gt; is a serious problem for maize and sorghum in sub-Saharan
Africa, and has become established in North Carolina where eradication
efforts have been ongoing for twenty years.</description>
		<content:encoded><![CDATA[<p>Parasitic plants are another topic you didn&#8217;t have time to mention.  <a href="http://www-biol.paisley.ac.uk/bioref/Tracheophyta/Orobanche.html" rel="nofollow"><i>Orobanche</i>,<br />
the broomrape</a>, is amazing.  A snapdragon with no leaves, nothing<br />
green, just the showy flower spike and an organ that saps all its nutrition<br />
from the host (tomato, sunflower, others).</p>
<p>How does a parasitic plant find its victims, the hosts for its next<br />
generation?  Each <i>Orobanche</i> flower makes thousands of tiny seeds,<br />
nearly microscopic.  These seeds sift down into the soil and wait.  For<br />
years.  Until a root of their host plant grows very close, ca. 2 mm.  Not<br />
until then will the seed germinate, detecting a specific chemical exuded from<br />
the root.  The minuscule germinated root invades the host&#8217;s root, and by<br />
summer there&#8217;s a fine <i>Orobanche</i> flower spike and a very sick tomato.</p>
<p><i>Orobanche</i> is an economically important parasite in<br />
some places, e.g. for tomato in Israel and chickpea in southern Europe.  A<br />
related species, <a href="http://en.wikipedia.org/wiki/Striga_%28plant%29" rel="nofollow"><i>Striga</i><br />
(witchweed)</a> is a serious problem for maize and sorghum in sub-Saharan<br />
Africa, and has become established in North Carolina where eradication<br />
efforts have been ongoing for twenty years.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Dave Matthews</title>
		<link>http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/comment-page-1/#comment-4060</link>
		<dc:creator>Dave Matthews</dc:creator>
		<pubDate>Thu, 09 Nov 2006 02:42:28 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/#comment-4060</guid>
		<description>Great talk today!

The most interesting part scientifically was the question about which of a
parasite&#039;s traits are evolutionarily adaptive and which are only incidental.
The blind watchmaker&#039;s watch vs. the spandrel.

The most powerful approach to this question is genetics.  Knock out or
modify the trait genetically (or find natural genetic variations), and test
whether it affects the parasitic interaction.

This approach is quite easy to do in some cases, but not (yet) in most of
the fascinating examples you discussed.  It&#039;s easier for bacterial and viral
parasites (aka pathogens, same thing).  Primarily because their short
generation times allow accelerated evolution.  In addition some viruses like
influenza have high mutation rates and correspondingly large numbers of
progeny per generation.  John Barry&#039;s &lt;a href=&quot;http://www.jhsph.edu/publichealthnews/articles/2005/great_influenza.html&quot; rel=&quot;nofollow&quot;&gt;The
Great Influenza&lt;/a&gt; is excellent about influenza virus evolution.

You didn&#039;t mention the evolution of hosts in response to the parasites.
(It was only an hour&#039;s talk.)  For example the selection of hemoglobin genes
resistant to malaria&#039;s sickle-cell-anemia effects.  In the world of plant
parasites there are fascinating examples of &quot;gene-for-gene&quot; coevolution, one
resistance gene in the host corresponding to each of the parasite&#039;s genes for
virulence, and vice versa, a coevolutionary arms war.  This is an ongoing
coevolution in real time, year to year.  Right now &lt;a href=&quot;http://wheat.pw.usda.gov/GG2/rust.shtml&quot; rel=&quot;nofollow&quot;&gt;a new mutation in the wheat
parasite, stem rust&lt;/a&gt;, threatens to spread worldwide before plant breeders
can find and deploy a resistance gene to prevent devastation.  Norman Borlaug
and millions of research dollars are involved in this effort.


-   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -
David E. Matthews, Ph.D.          USDA-ARS Plant Genome Database Curator
Cornell University                Email: matthews@greengenes.cit.cornell.edu
Department of Plant Breeding                          Phone: +1-607-255-9951
409 Bradfield Hall                                      Fax: +1-607-255-6683
Ithaca, New York 14853, USA             GrainGenes: &lt;a href=&quot;http://wheat.pw.usda.gov&quot; rel=&quot;nofollow&quot;&gt;http://wheat.pw.usda.gov&lt;/a&gt;</description>
		<content:encoded><![CDATA[<p>Great talk today!</p>
<p>The most interesting part scientifically was the question about which of a<br />
parasite&#8217;s traits are evolutionarily adaptive and which are only incidental.<br />
The blind watchmaker&#8217;s watch vs. the spandrel.</p>
<p>The most powerful approach to this question is genetics.  Knock out or<br />
modify the trait genetically (or find natural genetic variations), and test<br />
whether it affects the parasitic interaction.</p>
<p>This approach is quite easy to do in some cases, but not (yet) in most of<br />
the fascinating examples you discussed.  It&#8217;s easier for bacterial and viral<br />
parasites (aka pathogens, same thing).  Primarily because their short<br />
generation times allow accelerated evolution.  In addition some viruses like<br />
influenza have high mutation rates and correspondingly large numbers of<br />
progeny per generation.  John Barry&#8217;s <a href="http://www.jhsph.edu/publichealthnews/articles/2005/great_influenza.html" rel="nofollow">The<br />
Great Influenza</a> is excellent about influenza virus evolution.</p>
<p>You didn&#8217;t mention the evolution of hosts in response to the parasites.<br />
(It was only an hour&#8217;s talk.)  For example the selection of hemoglobin genes<br />
resistant to malaria&#8217;s sickle-cell-anemia effects.  In the world of plant<br />
parasites there are fascinating examples of &#8220;gene-for-gene&#8221; coevolution, one<br />
resistance gene in the host corresponding to each of the parasite&#8217;s genes for<br />
virulence, and vice versa, a coevolutionary arms war.  This is an ongoing<br />
coevolution in real time, year to year.  Right now <a href="http://wheat.pw.usda.gov/GG2/rust.shtml" rel="nofollow">a new mutation in the wheat<br />
parasite, stem rust</a>, threatens to spread worldwide before plant breeders<br />
can find and deploy a resistance gene to prevent devastation.  Norman Borlaug<br />
and millions of research dollars are involved in this effort.</p>
<p>-   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   &#8211;   -<br />
David E. Matthews, Ph.D.          USDA-ARS Plant Genome Database Curator<br />
Cornell University                Email: <a href="mailto:matthews@greengenes.cit.cornell.edu">matthews@greengenes.cit.cornell.edu</a><br />
Department of Plant Breeding                          Phone: +1-607-255-9951<br />
409 Bradfield Hall                                      Fax: +1-607-255-6683<br />
Ithaca, New York 14853, USA             GrainGenes: <a href="http://wheat.pw.usda.gov" rel="nofollow">http://wheat.pw.usda.gov</a></p>
]]></content:encoded>
	</item>
	<item>
		<title>By: snaxalotl</title>
		<link>http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/comment-page-1/#comment-4059</link>
		<dc:creator>snaxalotl</dc:creator>
		<pubDate>Tue, 07 Nov 2006 18:48:32 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.discovermagazine.com/loom/2006/11/07/cornell-gets-infected-tomorrow/#comment-4059</guid>
		<description>correction. zombie carl will be appearing at cornell, giving a speech dictated by his parasites. you&#039;re not fooling anyone, parasites ... carl seems to know just a little too much about the subject</description>
		<content:encoded><![CDATA[<p>correction. zombie carl will be appearing at cornell, giving a speech dictated by his parasites. you&#8217;re not fooling anyone, parasites &#8230; carl seems to know just a little too much about the subject</p>
]]></content:encoded>
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