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The Loom

Archive for December, 2008

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Ready to Meet Aliens [Tattoo]

voyager-hydrogen.jpgBob, a software architect, writes, “The diagram is part of the key used on the Pioneer 10 and 11 plaques and the Voyager 1 and 2 records.  It represents the spin-flip transition of neutral atomic hydrogen, and so provides a universal physical constant, a measure of length and of time, by virtue of the photon it emits. These are the base units on those plaques and records, where we attempt to communicate very precise information without any shared language or other common assumptions.  This diagram is part of the ultimate ‘message in a bottle.’”

Carl: More on the spin-flip diagram at Wikipedia.

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December 17th, 2008 7:46 AM by Carl Zimmer in Science Tattoo Emporium | 2 Comments » | RSS feed | Trackback >

The Puppet Master’s Medicine Chest

euhaplorchis.jpgYou go for a swim, and you don’t even notice the tiny worm that burrows into your skin. It slips into a vein and surges along through the blood for a while. Eventually it leaves your blood vessels and starts creeping up your spinal cord. Creep creep creep, it goes, until it reaches your head. It curls up on the surface of your brain, forming a hard cyst. But it is not alone–every time you’ve gone for swim, worms have slithered into you, and now there are thousands of cysts peppering your brain.

And they are all making drugs that are seeping into your neurons. These drugs are a bit like Prozac, except far more sophisticated. They target certain neurons in certain parts of the brain, altering your behavior surgically, without unwanted side effects.

You don’t know what’s happening to you. But in situations in which you’d expect to feel scared or stressed, you just want to race around. You whirl in circles, doing whatever is necessary to get the attention of the very thing that terrifies you. Thanks to your uncontrollable flailing, that terror  finds you, and you are destroyed.

This is how I imagine you’d feel if you were a fish infected by a parasitic worm called Euhaplorchis californiensis.

I first encountered these remarkable parasites about ten years ago, when I took a trip out to Santa Barbara. In the estuaries and salt marshes along the California coast, one of the most common fish is the California killifish, and many of them carry the parasites. The parasites get their start in horn snails, where they produce offspring that can swim around the water searching for killifish. In their next phase, they live as cysts on the brains of the killifish, but in order to reach the stage when they can reproduce, they must get inside the guts of shore birds.

Kevin Lafferty, who studies these parasites, showed me a tank full of infected killifish. Despite having thousands of cysts on their brains, they could swim as vigorously as uninfected killfish. They can also get as much food as healthy fish and reproduce normally. But the fish in the tank acted oddly. They swam up near the surface of the water, making tight turns that showed off their glinting sides. It’s tempting to say that the fish are trying to make themselves as conspicuous as possible, but for a fish, it doesn’t really matter how conspicuous it is to a human. So Lafferty had run an experiment to see whether the birds thought the infected fish were acting oddly. There is indeed a difference–the infected fish are 10 to 30 times more likely to get grabbed by a fish bird than a parasite-free one.

Many parasites have evolved such wickedly elegant strategies for manipulating the behavior of their hosts for their own benefit (which I describe at more length in my book Parasite Rex). But exactly how they do this parasitological voodoo is quite mysterious. A number of studies suggest that parasites release chemicals that can precisely alter the way in which the nervous systems of their hosts work. But it’s easy for parasites to hide a potent drug in the normal flow of neurochemistry in the brain. It’s also possible, at least in some cases, that parasites don’t do much of anything to manipulate their hosts. Just being infected can affect how animals behave–in some cases making them sluggish, in some cases stressing them out.

Jenny Shaw, a post-doctoral researcher at the University of California at Santa Barbara, has been working with Lafferty and other colleagues to figure out how Euhaplorchis manipulates the killifsh. They’re reporting some early results in a new paper in the Proceedings of the Royal Society. While they haven’t found the Parasite Panic Pill just yet, they do have some intriguing results. They took tiny pieces from different regions of the brains of infected and clean killifish. In each chunk of brain, they measured levels of neurotransmitters such as dopamine and serotonin. To compare the effects of parasites to ordinary stress, they also looked at the brains of stressed killifish (you stress a killifish by lowering the water in its tank).

Shaw and her colleagues found that the brain of an infected fish is not the brain of a stressed fish. When healthy fish get stressed, they produce serotonin in a region of the brain called the raphe nuclei. The parasites block that response. The parasites also lowered serotonin in the hippocampus, while boosting dopamine in the hypothalamus. The more parasites a fish had, the stronger these effects were.

Shaw and her colleagues point out that in normal fish, a surge of serotonin can cause fish to freeze, which is a good way to hide from motion-sensing predators. By lowering the serotonin from the raphe nuclei, parasites may prevent fish from hiding from wading birds. Dopamine, on the other hand, stimulates fish to swim more and behave aggressively. It’s possible that a parasite-boosted level of dopamine also helps turn fish into bird breakfast.

It may be years before someone finds the molecules these parasites release to cause these changes in serotonin and dopamine. But in the meantime, it’s pretty mind-blowing to think that there are literally millions of fish in the waters off of California being drugged by their parasite overlord. Scientists may have to wait a while before they can speak definitively about the medicine chests of the puppet masters, but science fiction novelists (I’m talking to you, Scott Sigler) are welcome to start their engines.

Shaw et al, Parasite manipulation of brain monoamines in California killifish (Fundulus parvipinnis) by the trematode Euhaplorchis californiensis, Proceedings of the Royal Society doi:10.1098/rspb.2008.1597

[Image from Jenny Shaw's web site]

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December 16th, 2008 8:00 PM by Carl Zimmer in Brains, The Parasite Files | 12 Comments » | RSS feed | Trackback >

Nonane on the Brain [Tattoo]

nonane-1.jpg

Lisa writes, “These are simple hydrocarbon chains (nonane, to be exact)– one on each wrist.  They end on the bottom sides of my wrists.  I am a synthetic organometallic chemistry PhD student at the University of Washington, and I got these linear hydrocarbon ‘bracelets’ as I transitioned into my undergrad chemistry program.  When I get my PhD, I want to get a tattoo of the first crystal structure I published (of my first unique molecule synthesized)!”

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December 16th, 2008 6:38 AM by Carl Zimmer in Science Tattoo Emporium | 1 Comment » | RSS feed | Trackback >

The Evolution of the Face: A Letter to Some Readers in Tennessee

chimpface600.jpgSomething strange recently happened to me in Tennessee. I wasn’t actually in Tennessee when it happened. The strangeness emanated from there–actually, from one spot in Tennessee–and eventually reached me here up in New England.

It started with a column I wrote in the October issue of Discover, about the evolution of the human face. Sometimes people write letters to the magazine about my pieces. My editors dropped a note to let me know that all at once they got 40 60 letters about my column. All from the outskirts of Memphis. All pretty much identical in style and substance. Some had been written on a computer, but some were written by hand–young hands, judging from their appearance.

Here’s a sample…

“I enjoyed reading your article and was interested in the research done on how the face and its muscles work to make expressions. I however believe that the brain and facial expressions are not a byproduct of years of evolution but instead a fingerprint of intelligent design. You claim in your article, that the muscles of the face are the result of the transition of life from land to water, but where is the fossil record for the jump? None have been found. There is no proof of the evolution of water to land creatures.”

And a second…

“I would like to show you what I think may have happened. First off, there is the law of entropy. This law states that everything is in a state of going deeper into chaos. The brain could not have formed going from a blob of amino acid to a highly complex organ that is capable of generating the power that is does. That is going into a state of unity and order. According to natural laws, this is impossible. Only a creator is capable of doing this.”

And a third

“If the face is an irreducibly complex machine, which it is, it cannot evolve because the original face would be missing parts, which would make the whole machine non-fuctioning. This rules out the possibility of evolution in human faces.”

I don’t know if all these letters came from a single class or club. In any case, the folks at Discover asked me if I’d write something in response. So–to my correspondents from Tennessee:

(more…)

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December 15th, 2008 3:10 PM by Carl Zimmer in Brains, Evolution | 104 Comments » | RSS feed | Trackback >

Living Fossil [Tattoo]

limulus.jpg Loren, a biology graduate student, writes, “It’s a sketch of the horseshoe crab Limulus, such as a zoologist would make (and with the abdominal segments correctly identified). Perhaps the most magnificent living fossil of all, the horseshoe crab is the survivor of a lineage that extends back some 445 million years into the Ordovician. The four extant species are the only living representatives of the ancient arthropod class Merostomata and the only known chelicerate crabs.”

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December 15th, 2008 6:31 AM by Carl Zimmer in Science Tattoo Emporium | 1 Comment » | RSS feed | Trackback >

Microcosm On Cleveland Plain Dealer’s List of Best Books of The Year

Here’s the list. (And here’s the book.)

[Update--fixed the paper's title. Sorry, people of Cleveland.]

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December 14th, 2008 11:03 AM by Carl Zimmer in Microcosm: The Book | 4 Comments » | RSS feed | Trackback >

Hold Very Still…

laser guide

Frank writes, “Hey there!  I didn’t tattoo science, science tattooed me!  I’m coming up on being five years free of testicular cancer thanks in part to this tiny tattoo that helped the technicians correctly align my Guidant radiation treatments.”

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December 12th, 2008 12:29 AM by Carl Zimmer in Science Tattoo Emporium | 6 Comments » | RSS feed | Trackback >

Secretary of Synthetic Biology

Barack Obama has picked Steven Chu, director of Lawrence Berkeley National Laboratory at Berkeley as his Secretary of Energy. This will be interesting–what happens when you put a Nobel-prize winning scientist in charge of a government department? Here’s one prediction: expect a lot of synthetic biology. Practically nobody has heard of synthetic biology today, but that will probably change.

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December 11th, 2008 10:39 AM by Carl Zimmer in General | 11 Comments » | RSS feed | Trackback >

The Sleep of Reason

sleep of reason

John, a graduate student in neurobiology at Cornell, writes, “Anyway, here’s my “science tattoo” and a bit of back story. It’s not directly science, but more like philosophy of science. It’s a piece by Francisco Goya, El Sueno de la Razon Produce Monstros. It means “The Sleep of Reason Produces Monsters”, and it is part of his series of lithographs in the book Los Caprichos, which was highly critical of the Spanish Aristocracy of the time (1799). I first saw this image when I was in AP Art History in Highschool, about 9 years ago. Within seconds of seeing it, I thought to myself that this would be my first tattoo– and finally, it is! I had never seen an original print, though, even having  been to the Prado museum in Madrid. However, I happened to google it differently back in March and found that there was a print here at Cornell in the Johnson museum! I finally got to see it, and the staff there had me come back to get a picture of the tattoo next to the original, which they published in their seasonal magazine.”

Carl: Here is the original print, from Cornell’s Herbert Johnson museum’s web site.

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December 11th, 2008 7:17 AM by Carl Zimmer in Science Tattoo Emporium | 4 Comments » | RSS feed | Trackback >

Ringed By Physics

maxwell-tattoo.jpgWeldon writes, “I doubt I’m the only one with this, but Maxwell’s Equations in differential form on my arm are attached. Unfortunately it’s hard to get any shot of all four at once (given the curvature) and it’s hard to get my arm in the right position for any camera to get Ampere’s circuital law.”

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December 10th, 2008 7:13 AM by Carl Zimmer in Science Tattoo Emporium | 1 Comment » | RSS feed | Trackback >

You Want Eyes? We Got Eyes

A while back I mentioned I’d written a piece on the evolution of weird eyes for the new journal Evolution: Education and Outreach. Now the issue in which it appears–a special one dedicated to the evolution of the eye–is online and free as free can be. So download away. Here’s the table of contents, with links.

Evolution: Education and Outreach
Volume 1 Issue 4

Editorial

351. Editorial by Gregory Eldredge and Niles Eldredge (PDF)

352-354. Introduction by T. Ryan Gregory (PDF)

355-357. Casting an Eye on Complexity by Niles Eldredge (PDF)

Original science / evolution reviews

358-389. The Evolution of Complex Organs by T. Ryan Gregory (PDF)
(Blog: Genomicron)

390-402. Opening the “Black Box”: The Genetic and Biochemical Basis of Eye Evolution by Todd H. Oakley and M. Sabrina Pankey (PDF)
(Blog: Evolutionary Novelties)

403-414. A Genetic Perspective on Eye Evolution: Gene Sharing, Convergence and Parallelism by Joram Piatigorsky (PDF)

415-426. The Origin of the Vertebrate Eye by Trevor D. Lamb, Edward N. Pugh, Jr., and Shaun P. Collin (PDF)

427-438. Early Evolution of the Vertebrate Eye–Fossil Evidence by Gavin C. Young (PDF)

439-447. Charting Evolution’s Trajectory: Using Molluscan Eye Diversity to Understand Parallel and Convergent Evolution by Jeanne M. Serb and Douglas J. Eernisse (PDF)

448-462. Evolution of Insect Eyes: Tales of Ancient Heritage, Deconstruction, Reconstruction, Remodeling, and Recycling by Elke Buschbeck and Markus Friedrich (PDF)

463-475. Exceptional Variation on a Common Theme: The Evolution of Crustacean Compound Eyes by Thomas W. Cronin and Megan L. Porter (PDF)

476-486. The Causes and Consequences of Color Vision by Ellen J. Gerl and Molly R. Morris (PDF)

487-492. The Evolution of Extraordinary Eyes: The Cases of Flatfishes and Stalk-eyed Flies by Carl Zimmer (PDF)
(Blog: The Loom)

493-497. Suboptimal Optics: Vision Problems as Scars of Evolutionary History by Steven Novella (PDF)
(Blog: NeuroLogica)

Curriculum articles

498-504. Bringing Homologies Into Focus by Anastasia Thanukos (PDF)
(Website: Understanding Evolution)

505-508. Misconceptions About the Evolution of Complexity by Andrew J. Petto and Louise S. Mead (PDF)
(Website: NCSE)

509-516. Losing Sight of Regressive Evolution by Monika Espinasa and Luis Espinasa (PDF)

Book reviews

548-551. Jay Hosler, An Evolutionary Novelty: Optical Allusions by Todd H. Oakley (PDF)

Image: Vernhart on Flickr

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December 10th, 2008 1:01 AM by Carl Zimmer in Evolution, Writing Elsewhere | 2 Comments » | RSS feed | Trackback >

Microcosm: One of Granta Magazine’s Best of 2008

Here’s the list.

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December 10th, 2008 12:47 AM by Carl Zimmer in Microcosm: The Book | No Comments » | RSS feed | Trackback >

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