Category: Link Love

Time to vote for the 3 Quarks Daily Science Prize

By Carl Zimmer | June 5, 2011 12:51 am

The folks at 3 Quarks Daily are winnowing down the entrants for the best science blog post of the year. They want you to help select the finalists by voting for your favorite post from the 87 nominees. (The Loom makes an appearance at #76 with “The Human Lake.”) You can vote till June 8, 11:59 PM EST.

CATEGORIZED UNDER: General, Link Love

CreatureCast presents the baroque life on a lobster

By Carl Zimmer | May 9, 2011 10:07 am

The folks at CreatureCast have created a new animation about the weirder corners of zoology. Behold Symbion pandora, an animal that clings to the mouthparts of lobsters, where it engages in the weirdest sex life I’ve ever heard of.

CATEGORIZED UNDER: Link Love

Darwin meets the citizen scientists

By Carl Zimmer | April 29, 2011 11:54 am

Charles Darwin was the original crowd-sourced scientist. He may have a reputation as a recluse who hid away on his country estate, but he actually turned Down House into the headquarters for a massive letter-writing campaign that lasted for decades. In her magisterial biography of Darwin, Janet Browne observes that he sometimes wrote over 1500 letters in a single year. Darwin was gathering biological intelligence, amassing the data he would eventually marshall in his arguments for evolution. In the letters he wrote to naturalists around the world, Darwin asked for details about all manner of natural history, from the color of horses in Jamaica to the blush that shame brought to people’s cheeks.

Given the skill with which Darwin used the nineteenth-century postal system, I always wonder what he would have done with the Internet. A new paper offers a clue: he might have enlisted thousands of citizen scientists to observe evolutionary change happening across an entire continent.

Darwin used his Victorian crowd-sourcing to collect evidence that was consistent with his evolutionary theory; he didn’t expect that he could actually document evolutionary change happening in his own lifetime. Ironically, he probably could have. Gregor Mendel worked out the basic rules of genetics around the time Darwin published The Origin of Species. At the time, pollution from England’s coal was turning trees dark, giving an evolutionary edge to dark moths over light ones. A naturalist even wrote directly to Darwin in 1878 to raise the possibility that natural selection was driving the shift in moth color. But it wasn’t until 14 years after Darwin’s death that a naturalist explicity put this idea into print.

In the decades after Darwin’s death, biologists translated Darwin’s ideas into the language of statistics. They figured out how to make measurements on animals and plants in the wild, and how to discover in those measurements the traits that led to the most reproductive success. Evolutionary biologists have now made thousands of measurements of natural selection in the wild. But each of those measurements has been hard won. To see natural selection, researchers must study dozens or hundreds of individuals. To get a sense of how tough this work is, read The Beak of the Finch: A Story of Evolution in Our Time, in which Jonathan Weiner chronicles the adventures of Peter and Rosemary Grant, who have traveled to an isolated island in the Galapagos Archipelago each summer for forty years in order to measure natural selection on Darwin’s finches.

But Jonathan Silvertown of The Open University in England and his colleagues have found a way to spread this kind of work far and wide. They set up a web site where volunteers could sign up to become amateur evolutionary biologists. They ende up with over 6,000 volunteers, who sent them measurements from across Europe.

Their measurements came from an animal that’s at once humble and iconic. The land snail Cepaea is common in gardens, ditches, forests, and meadows throughout Europe. The snails come in a beautiful variety of colors, as this photograph from Poland demonstrates. The patterns are encoded in genes, which the snails pass down to their offspring. In the early 1900s, many naturalists considered the patterns to be pretty but insignificant. They were just the result of random mutations that cropped up and then spread through the snail population thanks to chance.

Starting in the 1930s, a team of Oxford scientists took a close look at which snails lived and died. They could do so because the snails are a favorite meal for thrushes, which like to pick up their prey and carry the snails into the air, whereupon they drop the snails onto rocks below to crack the snails. The Oxford researchers were able to catalog these smashed shells, noting their colors and stripes.

The researchers found that some colors and stripes were more common among the shell debris than you’d expect from chance alone. It turns out that the birds are more likely to pick out the snails that stand out against the background. So snails that are better camouflaged are more likely to survive. Which pattern works best depends on where a snail lives; what hides a snail crawling over a dark forest floor doesn’t work so well in a field grazed short by cattle. The researchers found that the most common patterns were, indeed, well-matched to where the snails lived.

This research on Cepaea snails helped establish natural selection as a powerful force in evolution–although bird-driven natural selection turns out to be http://www.ncbi.nlm.nih.gov/pubmed/10983823“>not the sole force at work. Studies across Europe revealed, for example, that southern European snails are more likely to have yellow shells than their darker northern cousins. The difference is probably due to the climate: yellow shells bounce sunlight away and keep the southern snails cool.

A few years ago, Silvertown and his colleagues set out to gather a new batch of observations on Cepaea to compare with these historical records. They wondered, for example, if the warming that Europe has experienced might have made northern snails more yellow. Through the web site Evolution Megalab, they enlisted people from 15 different countries, who set out into their own neighborhoods to find the snails and note their colors. Combining the new observations with the old, the scientists ended up with half a million snails, organized in a geographical database along with information such as the habitat where the snails lived, as well as the temperature and rainfall at each location. Nothing quite like it has ever been achieved by evolutionary biologists–professional or otherwise.

The collection chronicles fifty years of snail evolution, over the course of about twenty generations. In that time, the researchers didn’t detect a continent-wide change in the frequency of yellow shells. Only in populations that lived on beach dunes did yellow shells become more common. Silvertown and his colleagues suspect that most snails have been coping with the warming temperatures in Europe by spending more time in the shade. On the treeless dunes, however, that’s not an option. As a result, natural selection has favored the yellow snails, which can stay cooler without the help of foliage.

But Silvertown and his colleagues did find other shifts that took place across all of Europe. Snails without a stripe on their shell declined by about 10%, while snails with a mid-line band increased by 5%. The scientists doubt that the rise of striped snails has anything to do with a shifting climate. Indeed, the striped snails have become more common in southern Europe than in northern Europe–the opposite of what you’d expect if stripes were a defense against heat.

The scientists don’t know for sure what’s behind this evolution, but they have an idea. The song thrushes that eat the snails have been declining in some places for the past thirty years. It’s possible that the change in the predatory pressure of birds is shifting the force of natural selection.

It’s the sort of idea you could imagine Darwin coming up with as he sat in his study, paging through letters from his farflung correspondents. But now Silvertown and his colleagues are going to test it, taking advantage of the original citizen scientists: birders. And if you’re reading this in Europe, you can be part of the investigation.

PS: In case you don’t know how to hunt for a snail, here is a charming video from the Megalab:

CATEGORIZED UNDER: Evolution, Link Love, Top posts

Frontiers in dark matter, and comics

By Carl Zimmer | April 28, 2011 3:02 pm

Via fellow Discover blogger Sean Carroll, I came across Jorge Cham’s podcast/comic/video about cosmology. I’m embedding it here, not just because it’s a very good summary of where we stand in understanding the stuff of the cosmos, but because Cham–he of PhD comics–has done something fascinating here. He has combined three different media into something new. I think, on the whole, it works very well. It moves a bit too fast for my eye sometimes, and can get a little herky jerky. But a living comic illustration of a scientist talking? Me likes.

Dark Matters from PHD Comics on Vimeo.

CATEGORIZED UNDER: Link Love

Today at the Browser: I talk about five books on the strangeness of life

By Carl Zimmer | April 28, 2011 9:17 am

The Browser, one of my favorite sites for gathering interesting reads I can wield in my perpetual battle on behalf of procrastination, has a great feature called FiveBooks. From time to time, they ask a writer to select five of their favorite books on some particular topic, and then interview them about their choices. I was honored to be interviewed for today’s FiveBooks (just after Ian McEwan–yikes!). I chose the theme of “the strangeness of life” and then scanned my bookshelves for some favorite books that deal with it in one way or another. If you have any interest in good writing on natural history (including human natural history), I’ll wager you’ll like them all. Check it out.

Great science books for high school students: The hive-mind speaks

By Carl Zimmer | March 28, 2011 5:31 pm

Over the weekend, I was contacted by Melissa Townsend, an Arizona high school teacher, with this question:

Getting ready to assign spring reading to my students. What are your favorite non-fiction science books a HS kid can handle?

It’s an excellent question–there are some books that can open up the mind of a teenager, and leave an impression that lasts a lifetime. But when I got Townsend’s request, I was traveling to Washington to talk on a panel about blogging, so I was a bit scatter-brained. I therefore tossed the question out to the hive mind. When I read the responses, many of them made me think, “Yeah, what she said!”

Here is a selection of the answers. Add your own in the comment thread; I can update the list here accordingly.

The Immortal Life of Henrietta Lacks, by Rebecca Skloot. (This one was mentioned so often Townsend decided to go with it.)

Wonderful Life: The Burgess Shale and the Nature of History, by Stephen Jay Gould

The Diversity of Life, by Edward O. Wilson

Under a Lucky Star, by Roy Chapman Andrews

The Double Helix: A Personal Account of the Discovery of the Structure of DNA, by James Watson

E=mc2: A Biography of the World’s Most Famous Equation, by David Bodanis

A Short History of Nearly Everything, by Bill Bryson

A Primate’s Memoir: A Neuroscientist’s Unconventional Life Among the Baboons, by Robert Sapolsky

Microbe Hunters, by Paul deKruif

The Ghost Map: The Story of London’s Most Terrifying Epidemic–and How It Changed Science, Cities, and the Modern World, by Steven Johnson

The Hot Zone: A Terrifying True Story, by Richard Preston

Musicophilia: Tales of Music and the Brain, Revised and Expanded Edition, by Oliver Sacks

Uncle Tungsten: Memories of a Chemical Boyhood, by Oliver Sacks

The Story of Science: Aristotle Leads the Way>, by Joy Hakim (follow the link to the other two books in the series, too)

The Meaning of It All: Thoughts of a Citizen-Scientist, Richard Feynman

Why Evolution Is True, by Jerry Coyne

CATEGORIZED UNDER: Book Preview, Link Love, Teaching

Crowd-sourcing the swimming eyeball

By Carl Zimmer | March 15, 2011 10:26 am

Last week I wrote in the New York Times about a fascinating new paper in which scientists described a lamp shell embryo that is, in effect, a swimming eyeball. The paper itself, however, comes in two parts. Along with the part on the swimming eyeball, the scientists also described a later stage of the lamp shell embryo in which it developed simple eyes connected to neurons. It’s primitive version of our own eyes that reveals some interesting things about evolution–particularly about the different photoreceptors that evolved over half a billion years ago for sensing light. At the time, I was struck by the fact that this one paper had two newsworthy insights. So I was glad to see PZ Myer takes up the other half of the story in excellent detail over at Pharyngula. Check it out.

World Science Festival TV: Another afternoon shot

By Carl Zimmer | February 25, 2011 1:59 pm

I really do have work to do. So I’m profoundly resentful (in the best way possible) that the World Science Festival has launched a video site called WSFtv. Here’s seven minutes of neuroscientist Giulio Tononi (subject of my recent New York Times profile) talking about his theory of consciousness. There is a lot more where that came from.

CATEGORIZED UNDER: Brains, Link Love, Writing Elsewhere

How The Simpsons make us human

By Carl Zimmer | February 17, 2011 11:12 am

If you’re interested in language, computers, and human cognition, check out my brother Ben’s first piece for the Atlantic, in which he pops the hype balloon that has inflated around the Watson computer’s performance on “Jeopardy.” Suddenly, my stash of Simpsons trivia has become profound!

CATEGORIZED UNDER: Evolution, Link Love

When plants become ultrafast killers, it's time to slow the camera down

By Carl Zimmer | February 16, 2011 2:01 pm

In my National Geographic article last year on carnivorous plants, I mentioned one particularly swift killer, the bladderwort. This aquatic plant grows little suction traps that can be triggered by passing animals. In a new paper in the Proceedings of the Royal Society, French researchers take the closest look yet at these ultrafast killers. They find that the door to the traps buckles like a popped bubble of chewing gum–but can then almost immediately swing back shut. Along with the new study on jumping fleas I wrote about last week, this is evidence of how far we’re just starting to explore the world of quick biology.

Science News has a nice write-up, and here is an excellent YouTube video provided by a co-author of the study, Philippe Marmottant, a physicist at Joseph Fourier University in Grenoble, France–complete with computer simulation, rubber-cap demos, and groovy soundtrack.

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The Loom

A blog about life, past and future. Written by DISCOVER contributing editor and columnist Carl Zimmer.
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