DISCOVER Magazine. Science, Technology and The Future
Current Issue
Subscribe Today »
  • Renew
  • Give a Gift
  • Archives
  • Customer Service
  • Facebook
  • Twitter
  • Newsletter
  • Health & Medicine
  • Mind & Brain
  • Technology
  • Space
  • Human Origins
  • Living World
  • Environment
  • Physics & Math
  • Video
  • Photos
  • Podcast
  • RSS
Not Exactly Rocket Science

Random gene sets can predict breast cancer survival better than supposedly cancer-related ones

I’ve written a few guest posts for the Faculty of 1000’s Naturally Selected blog, covering some interesting papers from last year that I missed here. There’s one about how eggs greet sperm, and another on how sleeping alone affects newborn babies. But the third post is one that I particularly want to draw attention to – it’s about a cancer paper that didn’t get much notice last year, but seems to deserve it. Here’s the first bit:

Tumours are bundles of cells that grow and divide uncontrollably, and their genes are deployed in unusual ways. By analysing the genes from different tumour samples, scientists have tried to pin down the chaotic events that lead to cancer. They seem to be making headway. Dozens of papers have reported “gene expression signatures” that predict the risk of dying or surviving from cancer, and new ones come out every month.

These signatures purportedly hint at how healthy cells transform into tumours in the first place. If, for example, the genes in question are involved in wound healing, this tells you that the healing process is somehow involved in a tumour’s progression. These collections of genes reveal deeper truths about the disease they’re associated with.

This idea sounds reasonable, but David Venet from the Université Libre de Bruxelles has thrown a big spanner into the works. He has shown that completely random sets of genes can predict the odds of surviving breast cancer better than published signatures.

Venet found three signatures that are completely unconnected to cancer. Instead, these collections of genes were associated with laughing at jokes after lunch, with the experience of social defeat in mice, and with the positioning of skin cells. All of them were associated with breast cancer outcomes.

Head over to Naturally Selected for the rest, including how long it took to get this study published.

Image by Hakan Dahlstrom

Share

February 3rd, 2012 by Ed Yong in Cancer, Genetics, Medicine & health | 2 Comments »

Abnormal brain structures hint at poor self-control and vulnerability to drug addiction

Our lives are full of instances where have to hold ourselves back. We stop ourselves from eating that tempting slice of cake to avoid putting on weight. We bite our tongues to avoid insulting our friends. We slam on the brakes to avoid killing a pedestrian.  To quote Yoda: “Control! Control! You must learn control.”

People with drug problems clearly have a problem with this. Their ability to resist their own impulses falters at the promise of the next hit. Now, scientists are starting to understand the changes in the brain that underlie these problems.

Karen Ersche from the University of Cambridge found that drug users have abnormalities in parts of the brain that are important for inhibiting unwanted actions. These same anomalies even exist in the brains of their siblings, who don’t have any drug problems themselves. They could act as a marker for people who are vulnerable to addiction. “Our findings provide further evidence for drug addiction being a brain-based disorder,” says Ersche.

This is far from the first study to examine the brains of drug users. But it’s never been clear whether changes in such brains were caused by drugs, or made people vulnerable to addiction in the first place. Both are possible. Stimulant drugs typically act on parts of the brain involved in motivation, and interfere with those that inhibit our impulses. But these effects could be worse if these neural circuits are already weak.

To separate these possibilities, Ersche studied 50 volunteers who had a long history of drug abuse. She compared them to their siblings, who had no drug problems, and to 50 unrelated volunteers who were also drugs-free. All of the recruits sat through a stop-signal test – a commonly used way of measuring self-control. Volunteers have to respond as quickly as possible to a stream of on-screen symbols – say, by pressing a key. If they hear a tone, which pops up unpredictably, they have to restrain themselves. (Try it yourself here).

The drug users struggled with the test compared to the unrelated volunteers, and needed more time to withhold their responses. Critically, their siblings fared just as badly, even though they weren’t using drugs. This strongly suggests that poor self-control isn’t the result of the drugs themselves, but of a shared (and probably inherited) vulnerability. “If you have brain with existing problems, the drugs have an easier play. It’s easier for them to take over,” says Ersche.

Ersche found the same pattern when she looked at her volunteers’ brains. First, she focused on their white matter tracts – the fibres that transmit signals from one area to another. These are the brain’s communications network, and their density indicates how good different areas are at shuttling information between them.

These connections were weaker among both the drug users and their relatives, compared to the healthy unrelated volunteers. The fibres were particularly sparse around the right inferior frontal cortex (IFC), an area involved in controlling our inhibitions. These abnormalities were linked to the volunteers’s scores on the stop-signal test – the weaker the connections, the slower their reaction times. With its communication lines weakened, the IFC was less able to exert its suppressive influence.

The siblings also shared anomalies in the size of some brain areas. Their putamens and medial temporal lobes were bigger, and their posterior insulas were smaller. All of these areas have been implicated in learning and memory. “This may be an indicator of an enhanced propensity to form habits,” says Ersche.

From these results, a cohesive picture emerges. Some parts of the brain are larger, increasing the attractiveness of potential rewards, and the odds of habitual, addictive behaviour. The IFC, which would normally suppress such desires, has less of a say because the fibres connecting it to other parts of the brain are weaker. It’s like having a mob of reckless friends who are egging each other on over fast broadband connections, while their sensible parents send them words of caution on a dial-up modem.

This is uncannily similar to what happens in  the teenage brain, where areas associated with reward mature before the prefrontal areas that exercise restraint. Other scientists have suggested that this gap in timing explains why teens are so prone to risky and impulsive behaviours. They’re not making thoughtless decisions – they simply weigh risks and rewards in a different way to adults. Perhaps people who are vulnerable to addiction never grow out of this asymmetry between desire and inhibition. “It does look like a developmental problem,” says Ersche, “but we really need to compare these brains to those of adolescents to know for sure.”

“This is a very important and well-designed study,” says Susan Tapert from the University of California, San Diego. She adds, “It will be important to understand how the non-drug dependent volunteers were able to avoid drug problems given same brain features as their siblings.”

This is a key point. Drug dependence runs in families, and it is clearly influenced by a person’s genes. But genes do not determine behaviour; they merely influence it. The non-addicted siblings in Ersche’s study illustrate the point beautifully. “They share so much,” says Ersche. “They have the same vulnerabilities as their drug-dependent brothers and sisters. They had a lot of domestic violence and troubled childhoods but they didn’t get into drugs. Their average age was 33. They may have had many opportunities to develop dependence, but they didn’t.”

Perhaps the other one had environmental influences that set them down a different path. Perhaps they also had inherited some “resilience factors” that their siblings did not.  In an earlier study with some of the same siblings, Ersche found that all of them are more impulsive, but only the drug users were “sensation-seekers”. These are subtly different traits. “Impulsive people act on the spur of the moment,” Ersche explains, “but sensation-seekers crave excitement and adventure. In contrast to the drug-dependent individuals, their siblings do not seem to crave for excitement and sensations, which might have protected them from taking drugs in the first place.

In the meantime, Ersche’s study suggests that the white fibre tracts around the IFC could be used as a marker for vulnerability to addiction. That’s useful for two reasons. We could use it to identify people who are most at risk of abusing drugs, before they actually encounter any problems. We could also see if people can strengthen the connections in this critical area. Many scientists have developed programmes for improving self-control at an early age. Monitoring the IFC’s white matter could provide an objective way of measuring whether those programmes are working. As Tapert says, “We might be able to modify these risky brain characteristics, to see if the misuse of drugs can be reduced.”

Reference: Ersche, Jones, Williams, Turton, Robbins & Bullmore. 2011. Abnormal Brain Structure Implicated in Stimulant Drug Addiction. Science http://dx.doi.org/10.1126/science.1214463

Share

February 2nd, 2012 by Ed Yong in Drugs, Neuroscience and psychology | 3 Comments »

Wired UK feature – scanning the Amazon by air

Some of you may remember that in September, I flew to Peru for a story I was writing for Wired UK. That story is finally out. It’s about Greg Asner, a scientist who is scanning the Amazon by air, in an effort to study and save it. Here’s how it starts:

A small twin-propeller plane flies over the Amazon rainforest in eastern Peru. The scale of the vegetation is staggering. The tree canopy stretches as far as our eyes can see – an endless array of broccoli florets bounded only by haze and horizon. Greg Asner, 43, Asner has seen the rainforest from this vantage point many times before, but he still stares out the window in rapt fascination.

This patch of forest in the Tambopata National Reserve is luxuriant with life even by the Amazon’s standards. A 50-hectare patch of forest – the size of as many rugby pitches – contains more plant species than the whole of North America. “We might as well be exploring Mars,” says Asner. “You’re looking at areas where no human has ever been. There’s no access.”

Access isn’t a problem for Asner. Behind him are three state-of-the-art sensors of his own devising which, as the plane flies along, takes the forest’s measure. “We’re trying to do something really new,” Asner says. “This world is changing and it requires science that isn’t incremental.” Using the technology he’s developed, Asner is mapping the shape and size of the trees down to individual branches from two kilometres overhead. He can measure the carbon stored in trunks, leaves and soil. He can even identify individual plant species based on the chemicals they contain. With wings and lasers, Asner is conducting one of the most ambitious ecology studies ever staged. He accumulates more data in a single hour than most ecologists glean in a lifetime. With this data, he means to influence governments, steer the course of climate-change treaties and save the forests over which he soars.

Asner’s high-flying science has roots on the ground. In 1994, Asner was working in Hawaii for Nature Conservancy, the environmental non-profit organisation. He was frustrated. His seemingly simple task of eliminating invasive plants was thwarted by an equally simple problem – he could not find them. “We were stumbling around in the dark. That’s how I started getting into this, thinking how we could get maps of this stuff.” Satellite data was too coarse and aerial photos uninformative. Eventually, during a PhD position at the University of Colorado, Asner found his answer – airborne sensors. Fifteen years and much head-scratching later, his team has developed AToMS (Airborne Taxonomic Mapping System), a suite of three plane-borne sensors that he describes as “probably the most advanced Earth-mapping system in the world”.

I’m really proud of the piece. It was my first true taste of field reporting, the science is interesting, and it’s a bit structurally more interesting than what I normally do.

For the moment, you’ll have to buy the issue (or subscribe to the iPad edition) to read it. I’d encourage you to do that (support science writing!) but for non-UK people, the story will be online by the end of the month, and I’ll stick a PDF up in a few weeks.

Share

February 2nd, 2012 by Ed Yong in Uncategorized | 1 Comment »

The performance will continue after a brief intermission…

I’m going to be travelling for 2.5 weeks for some much-needed rest and recuperation. There are a few posts scheduled for the next few days and then I’m reposting some of my favourites from last year for a bit. If you’re hankering for your Not Exactly Rocket Science fix, now is as good a time as any to lose yourself in my archives.

A note about comments: as previously stated, the blog operates on a once-only moderation system. Your first comment needs moderation; if you have a previously approved comment, you’re fine. Expect delays in the approval conveyor while I’m away.

E

(Pic by Norbert Nagel)

Share

February 1st, 2012 by Ed Yong in Personal | 9 Comments »

Science writing I’d pay to read – January 2012

It’s time for December’s Science Writer Tip-Jar picks. For those new to this, here’s the low-down:

Throughout the blogosphere, people produce fantastic writing for free. That’s great, but I believe that good writers should get paid for good work. To set an example, I choose ten pieces every month that were written for free and I donate £3 to the author. There are no formal criteria other than I found them unusually interesting, enjoyable and/or important.

I also encourage readers to support these writers through two buttons on the sidebar. There are two ways to help. Any donations via “Support Science Writers” are evenly distributed to chosen ten at the end of the month. Donations via the “Support NERS” button go to me; I match a third of the total figure and send that to the chosen writers too.

So without further ado, and in no particular order, here are the picks:

  • Samuel Arbesman, who is killing it over at his new Wired blog. See these posts on the mathematics of cooking and of Lego as examples.
  • Greg Gbur (Dr Skyskull) for a great tale about the soldier-stabbing, bandit-negotiating Francois Arago, the world’s most interesting physicist.
  • Cassie Willyard on the problem with Patient Zero and false uninformative narratives in public health.
  • Greg Downey for probably the best thing you’ll ever read on the problems of evolutionary psychology.
  • Emily Willingham for thoroughly debunking an awful Atlantic piece on the imagined “real dangers” of GM crops
  • David Dobbs for sublime writing about a painful story: Scott’s Antarctic mission and the lacklustre penguin eggs they collected.
  • Kevin Zelnio for telling moving and utterly unique story about how he got into science… and inspiring hundreds of others to do so.
  • Maryn McKenna for her typically insightful coverage of the year’s most chilling story so far: the rise of completely drug-resistant TB in India
  • Sally Adee for a fascinating tour through the neuroscience of night terrors
  • Petra Boynton for an important and topical piece on grieving after stillbirth and our disbelief at reactions we cannot imagine.
Share

February 1st, 2012 by Ed Yong in Tip jar | 6 Comments »

Male spider snaps off own genitals inside female to fertilise her remotely, while being eaten

If your partner is likely to devour you after sex, snapping off your genitals inside her might seem a reasonable reproductive strategy. This game plan is used by males of the orb-web spider Nephilengys malabarensis and, it turns out, continues to work in their favour, regardless of whether they survive the encounter.

Thus begins my new piece for Nature News. Honestly, I can’t believe they let me keep the lede. Here’s more:

Daiqin Li at the National University of Singapore and his colleagues studied the species and found that after the male breaks away his severed organ continues to pump sperm into the female. This allows him to fertilize her remotely, while denying entry to other males. Even though the male cannot regrow his genitals and so renders himself sterile, he increases the odds that he will father the offspring of his one and only mate.

Male spiders deliver their sperm through a pair of structures known as palps, which are found on the sides of their heads. By serving sexual encounters between 25 pairs of virgin N. malabarensis, Li’s group found that every coupling ended with damage to the male’s palp. In 12% of cases it was partially severed; in the rest it snapped off completely.

Li thinks that this bizarre strategy, found in only two spider families so far, evolved to counter the female’s penchant for cannibalism. “The females are very aggressive and 75% of them kill the males during sex,” he explains. “The duration of copulation is also very short, and the females initiate the break-off.”

By dissecting the mated spiders, Li and his co-workers found that the palp has dispensed only about one-third of its sperm by the time the female pushes the male off. But it continues to transfer sperm after it breaks off, and does so at a faster rate.

And head over there for the rest of the story.

(In the picture at the top, the bigger female devours the smaller male while his palp clings on to her underside (in the red box).)

Share

February 1st, 2012 by Ed Yong in Animal behaviour, Animals, Invertebrates, Sex and reproduction, Spiders | 2 Comments »

Since pythons invaded, Florida’s mammal populations have crashed

It turns out that if you unleash giant snakes into a place that didn’t previously have giant snakes, the other local animals don’t fare so well. That seems obvious, but you might be surprised at just how badly those other animals fare.

Since 2000, Burmese pythons have been staging an increasingly successful invasion of Florida. No one knows exactly how they got there. They normally live in south-east Asia and were probably carried over by exotic wildlife traders. Once in America, they could have escaped from pet stores or shipping warehouses. Alternatively, overambitious pet owners could have released when they got too large for comfort. Either way, they seem to be thriving.

With an average length of 12 feet (4 metres), the pythons are formidable predators. They suffocate their prey with powerful coils, and they target a wide variety of mammals and birds. The endangered Key Largo woodrat and wood stork are on their menu. So are American alligators (remember this oft-emailed photo?). Conservationists are trying to halt the spread of the giant snakes, out of concern that their booming numbers could spell trouble for local wildlife.

Michael Dorcas from Davidson College thinks they are right to be concerned. In the first systematic assessment of the pythons’ impact, Dorcas has found that many of Florida’s mammals have plummeted in numbers in places where the snakes now live.

Read the rest of this entry »

Share

January 30th, 2012 by Ed Yong in Ecology, Environment, Invasive species, Reptiles, Snakes | 20 Comments »

Prions enter stealth mode in the spleen, causing silent infections

There’s something unfeasibly sinister about prions. These infectious entities are incredibly simple, but they can cause fatal and untreatable diseases like mad cow disease, CJD, and others. Prions are malformed versions of a protein called PrP. Like all other proteins, they’re made of chains of amino acids that fold into complex shapes. Prions fold incorrectly, and they encourage normal PrP to do so. These deformed proteins gather in large clumps that wreck brain tissue. Once this process begins, we have no way of stopping it. Prions are little more than bits of renegade origami, but they can bring down that most complex of biological structures – your brain.

It gets worse.

Before they spread to the brain, prions often multiply in the lymphatic system –the group of organs that includes the spleen, lymph nodes, appendix and tonsils. Vincent Béringue from the French National Institute for Agricultural Research has found that prions can hide in these tissues, turning individuals into silent carriers even if they never actually develop disease. Worse still, the spleen provides an easy entry-point for prions, allowing them to jump more easily from one species to another.

Read the rest of this entry »

Share

January 30th, 2012 by Ed Yong in Medicine & health, Prions | 4 Comments »

I’ve got your missing links right here (29 January 2012)

Top picks

Cancer is hard. This post is excellent.

Carl Zimmer has the best angle on the new story about Archaeopteryx’s colours: an embargoed tattoo

A secret group of Parisian artists break into museums & restore neglected artworks

X-Ray Laser Turns Up the Heat to 3.6 Million Degrees. That’s hotter than the sun’s corona.

People who regularly take their placebo pills are less likely to die than people who miss their placebo doses. Amazing.

Declan Butler has terrific piece assessing the claims in the debate about mutant H5N1 flu.

The Titanoboa Project wants to create a 50ft robotic version of prehistory’s biggest snake. What could go wrong?

Can a person actually survive being swallowed by a whale? An Ahab-like quest to find out.

GPS helps track what happens when vultures tear a human body apart. Forensic scientists have all the fun.

This is a great idea – two of Nature’s neuroscience editors are blogging about why they published specific papers. Transparency win.

Kevin Zelnio tells his moving and utterly unique story about how he got into science… and inspires hundreds of others to do so.

Back off, that’s MY teat! SciCurious on “teat ownership” in baby binturongs. Also known as bear-cats. And their butts smell of popcorn.

There’s a great discussion here on how people react to female scientists, following the ScienceOnline 2012 keynote speech by Mireya Mayor.

The sad saga of Little Albert has just got a lot sadder. A horrific tale of unethical science, and experiments on a mentally disabled infant.

Researchers watch as a virus learns a new way to infect bacteria. Carl Zimmer reports.

Charles Duhigg is killing it with his deep investigation into the human costs of Apple’s products

Read the rest of this entry »

Share

January 29th, 2012 by Ed Yong in Links | 5 Comments »

Jumping spiders use blurry vision to judge distance

We don’t like blurry vision, and we go out of our way to correct it with glasses and contact lenses. But some animals aren’t so fussy. The jumping spider not only tolerates blurry images, it deliberately produces them.

Jumping spiders, as their name suggests, leap onto their prey from afar. They judge their jumps using the two huge (and rather beautiful) eyes on the front of their faces. And to gauge how far away their targets are, they use special retinas that produce sharp images and out-of-focus ones at the same time.

Other animals have many different ways of judging depth, but none of them apply to jumping spiders. Humans mostly rely on our two eyes. Each gets a slightly different view of the world and our brain uses these differences to triangulate the distance to objects in front of us. But this ‘binocular vision’ only works if the two eyes see overlapping parts of the world. Those of jumping spiders do not.

Chameleons can judge distance by sensing how much they have to focus their eyes to bring an object into sharp relief.  But jumping spiders have no way of actively focusing their eyes. Finally, some insects judge distance by shaking their heads from side to side, which makes nearby objects move further across their field of view than far ones. But jumping spiders can accurately pounce onto their prey without moving their heads.

Without any of these three methods, how could they possibly gauge their precise killing pounces with any sort of accuracy? Takashi Nagata from Osaka City University has the answer.

Each of the front eyes has a unique staircase-shaped retina, with four layers of light-sensitive cells lying one over the other. By contast, our retinas only have one such layer. Scientists have known about the staircase retinas since the 1980s, but Nagata has finally shown exactly what they do.  He found that the top two layers are most sensitive to ultraviolet light. The two on the bottom have a penchant for green.

And that’s a bit odd. The way the layers are stacked means that green light only ever focuses sharply on the bottom one (layer 1). Blue light focuses on the one above it (layer 2), but those cells aren’t sensitive to blue. Instead, they see the world in fuzzy out-of-focus green.

Nagata thinks that this fuzzy vision isn’t a bug; it’s a feature. The amount of blur depends on an object’s distance from the spider’s eye. The closer it is, the more out of focus it is on the second retina. Meanwhile the first retina always gets a sharp image. By comparing the images on both layers, the spider can gauge depth with a single unmoving eye.

To test this idea, Nagata placed Adanson’s house jumpers in a special arena where they had to leap at prey. If the arena was flooded with green light, the spiders made accurate jumps. If Nagata used red light of equal brightness, they fell short of the mark. Nagata even created a mathematical model for the spider’s eye to predict how far it would miss its jump under different wavelengths of light. The model’s predictions matched the animal’s actual behaviour.

Humans actually do something similar. We can use the blurry nature of background images to get a sense of distance, even if all other cues are removed. Indeed, photographers often use blurry backgrounds to create a greater sense of depth. But this is just one of the tricks we use to judge depth, and perhaps a minor one. For the jumping spider, it seems to be the only trick in the playbook.

Reference: Nagata, Koyanagi, Tsukamoto, Saeki, Isono, Shichida, Tokunaga, Kinoshita, Arikawa & Terakita. 2011. Depth Perception from Image Defocus in a Jumping Spider. Science http://dx.doi.org/10.1126/science.1211667

Photo by Alex Wild

The eyes have it – a tour through the stunning world of animal eyes

<p>In the animal kingdom, eyes have evolved dozens of times. We’re familiar with the camera-style eyes in our own heads, and the weird compound eyes of insects, but there are far weirder ones out there. Scientists are discovering new structures and adaptations all the time. There are eyes with mirrors, eyes with optical fibres, and eyes with bifocal lenses. There are eyes that see in the dark, move around heads, or go into sleep mode. <span> </span>There are even eyes made of rock. This slideshow will take you on a tour of some of these recent eye-opening discoveries.</p><p>Eyes don’t even have to be organic. While most animal lenses are made of proteins, the fuzzy chiton – an armoured relative of snails and other molluscs – has <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">lenses made of rock</a>. The lenses are made of aragonite, a type of limestone and the same stuff that the chiton’s shell is made of. These rocky eyes give the chiton a view that’s a thousand times fuzzier than ours, but that’s still good enough to see passing predators. The eyes also erode as the chiton ages, which might explain why it has more than a hundred of them. <span> </span></p>
<p><strong>Read more: </strong><a title="Permanent Link: Chitons see with eyes made of rock" href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">Chitons see with eyes made of rock</a></p><p>Benjamin Franklin is credited with inventing bifocal glasses. These allow wearers to focus on both far and near objects by looking through different parts of the lens. But such lenses have been around for millions of years, on the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">nightmarish face of the sunburst diving beetle</a>. The beetle’s larva has six pairs of eyes, and the front set is unique in the animal kingdom. Each one has one lens and two retinas, one sitting behind and slightly below the other. The lens manages to focus sharp images onto both of them, so the beetle can see near and far objects at the same time, with equal sharpness. Its bifocal lens gives it two eyes for the price of one.</p>
<p><strong>Read more:</strong> <a title="Permanent Link: The beetle with bifocal eyes" href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">The beetle with bifocal eyes</a></p><p>In the deep ocean, the brownsnout spookfish can look up and down at the same time, with some of the animal kingdom’s strangest eyes. Each one is split into two connected parts, so it looks like the spookfish has four eyes. One half points up and the other points down, allowing the fish to look at both sky and abyss simultaneously. The downward eye is unique. Unlike the eyes of all other back-boned animals, which use a lens to focus light, <a href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">this one uses mirrors.</a> It uses hundreds of tiny crystals, arranged in a curved shape, to collect and focus light.</p>
<p>By reflecting light, rather than refracting it, these outer eyes could produce brighter images with higher contrasts that lens-carrying eyes normally would. That must give the fish a great advantage in the deep sea, where the ability to spot even the dimmest and briefest of lights can mean the difference between eating and being eaten.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Spookfish eye uses mirrors instead of a lens" href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">Spookfish eye uses mirrors instead of a lens</a></p><p>The box jellyfish isn’t just a simple blob of goo. It’s an active predator that hunts with 24 eyes. These are clustered into four groups of six. In each cluster, four eyes are simple pits or slits that sense the presence of light. The other two actually see images and they’re remarkably similar to our eyes. They have their own lenses, retinas and corneas, and they’re <a href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">even made using very similar genes</a>. Even though we’re separated by millions of years of evolution, box jellyfish and back-boned animals have evolved eyes by independently recruiting the same building blocks.</p>
<p>The eye clusters are weighed down by heavy crystals so they're always upright, even if the jellyfish is swimming upside-down. This gives the animal <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/28/why-box-jellyfish-always-have-four-eyes-on-the-sky/">a perpetual view of the sky</a>, which allows it to stay close to the mangrove forests where its prey lives.</p>
<p>(<em>Photos by Anders Garm</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Jellyfish and human eyes assembled using similar genetic building blocks" href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">Jellyfish and human eyes assembled using similar genetic building blocks</a></p><p>Mantis shrimps have the arguably the most incredible eyes of any animal. Each eye has three areas that can independently focus on objects, which means that a single mantis shrimp eye has “trinocular vision”. Our eyes have receptors that are tuned to three colours; those of mantis shrimps are tuned to at least twelve. And they can tune individual light-sensitive cells to local light levels.</p>
<p>Mantis shrimps can even see a special type of light – ‘circularly polarised light’ – <a href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing" target="_blank">that no other animal can</a>. This ability allows them to send secret messages, produced by circularly polarised light reflecting off different parts of their shell. The ability hinges on a structure in their eyes that’s <a href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">similar to technology found in our CD and DVD players</a>. The mantis shrimp’s biological engineering completely outclasses our man-made efforts; if we could duplicate it, we could have the basis of tomorrow’s multimedia players and hard drives.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Mantis shrimps have a unique way of seeing" href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing/">Mantis shrimps have a unique way of seeing</a>; <a title="Permanent Link: Mantis shrimp eyes outclass DVD players, inspire new technology" href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">Mantis shrimp eyes outclass DVD players, inspire new technology</a></p><p>When we go to sleep at night, we close our eyes to stop any errant light from disturbing our slumber. But the larvae of zebrafish go one further. They <a href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">shut down their eyes entirely at night</a>, becoming temporarily blind. Their vision only returns when daylight does. Energy is precious to the baby fish and eyes are gas-guzzling appliances, even when they’re set to standby. It makes sense to just shut them off instead.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Pocket Science – chameleons hunt with cold-proof tongues and zebrafish babies go blind at night" href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">Pocket Science –zebrafish babies go blind at night</a></p><p>Even our own familiar eyes have hidden surprises. In 2009, scientists found that we’re all <a href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">carrying living optic fibres called Muller cells</a>. These cells help to get round a structural problem in our eyes, where the light-sensing cells of the retina lie behind a tangled mass of nerves and blood vessels. It’s a bit like designing a camera, and sticking the wiring in front of the lens. Light gets through the mess inside the long, cylindrical Muller cells. It reflects down the cell, much like in an optic fibre, to hit the light-sensing cells on the other side. (<em>Image by <a href="http://commons.wikimedia.org/wiki/File:Human_left_eye-8.jpg">Elyzhium</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Living optic fibres bypass the retina’s incompetent design" href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">Living optic fibres bypass the retina’s incompetent design</a></p><p>Many mammals have evolved eyes that can see in the dark. That involves more than just becoming bigger. Their eyes have more light-sensitive rod cells, and these cells have changed at a microscopic level. They have converted the nucleus at the middle of each cell <a href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">into a light-collecting lens</a>.</p>
<p>In almost all complex cells, DNA is tightly packed around the edge of the nucleus but lightly packed towards its middle. But in the rod cells of nocturnal mammals, it’s the other way round. This inverted arrangement collects light that hits the rod cells and funnels it through to the retina underneath. By moving its DNA around, each cell has become a little optic fibre.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Nocturnal mammals see in dark by turning displaced DNA into lenses" href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">Nocturnal mammals see in dark by turning displaced DNA into lenses</a></p><p>Like many species that live in perpetual darkness, the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">blind cavefish has lost its eyes</a>. These fish have evolved from sighted ancestors <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/07/sleepless-in-mexico-%E2%80%93-three-cavefish-groups-independently-evolved-to-lose-sleep/">on several occasions in</a> different Mexican caves. Their eyes have degenerated over a million years of darkness, but their blindness can be easily reversed by a spot of clever breeding. Many genes govern the development of eyes, and different populations of cavefish have lost their vision by disrupting different eye genes. By breeding individuals from different caves, working genes from one parent can compensate for broken ones from another. The result: babies that can see. (<em>Photo by <a href="http://www.flickr.com/photos/skippy/75380086/sizes/z/in/photostream/">skpy</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Cross-breeding restores sight to blind cavefish" href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">Cross-breeding restores sight to blind cavefish</a></p><p>As babies, flatfishes like plaice and flounders look like every other fish. But as they grow up, one of their eyes moves to the other side of their heads. This allows the adults to lie flat on their sides without getting an eyeful of sand. The evolution of these grotesque fish is <a href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">beautifully captured by a fossil called Heteronectes</a>. It’s a half-committed flatfish. One of its eyes has begun migrating to the other side of its head but hasn’t made it all the way – it stops at the midline. We couldn’t have wished for a better intermediate form – it’s half-way between the standard fish body plan and the distorted visages of flounders and soles.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Early flatfish has eye that’s moved halfway across its head" href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">Early flatfish has eye that’s moved halfway across its head</a></p><p>The Hawaiian bobtail squid creates its own light, using special organs filled with glowing bacteria. But these organs don’t just produce light – <a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">they sense it too</a>. They are loaded with proteins that can detect light, and they produce nervous signals in bright conditions. They can expand and contract like an iris to control how much light gets through. They’re covered with a thick, transparent tissue that acts like a “lens”. The light organs are effectively an extra set of primitive eyes. They are living, ‘seeing’ flashlights. (<strong><em><span style="font-family: &quot;Calibri&quot;,&quot;sans-serif&quot;; font-weight: normal;">Image by </span></em></strong><em>William Ormerod</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">Glowing squid use bacterial flashlights that double as an extra pair of “eyes”</a></p>

Share

January 26th, 2012 by Ed Yong in Anatomy, Animal behaviour, Animal senses, Animals, Eye evolution, Invertebrates, Spiders | 4 Comments »

« Older Entries




    • About Not Exactly Rocket Science



      Ed Yong is an award-winning British science writer. His work has appeared in New Scientist, the Times, WIRED, the Guardian, Nature and more. Not Exactly Rocket Science is his attempt to talk about the awe-inspiring, beautiful and quirky world of science to as many people as possible.

      My personal website with biography, other writing, speaking engagements, and more

      Some interviews with me
      Some awards that I’ve won
      Who my readers are: 2008, 2009 and 2010 editions
      A complete list of posts from this blog

      Follow me on Twitter or Google+

      Contact me on edyong209[at]googlemail[dot]com

    • Support science writers


      Every month, I choose ten excellent blog posts and donate £3 to their authors. If you want to join me in supporting great science writing, use the first button. Any donations in June will be split evenly between these ten writers.

      If you would like to support this blog in particular, use the second button. For anything you donate, I will match a third and donate it to the month's chosen writers.

    • What others say

      "One of the best sites for in-depth analysis of interesting scientific papers" - The Times

      "One of the smartest science bloggers I read... a prime practitioner among the new generation of scientifically authoritative bloggers" - David Rowan, editor of Wired UK

      "Engaging and jargon-free multimedia storytelling about science and the digital age" - National Academy of Sciences

      "A consistently illuminating home for long, thoughtful, and thorough explorations of science news" - National Association of Science Writers

      "Head and shoulders above many broadsheet hacks" - Ben Goldacre

      "Ed Yong... is made of pure unobtanium and rides TWO Toruks." - Frank Swain

      "Ed Yong is better than chocolate, fairy lights, and kittens chasing yarn. That is all." - Christine Ottery

    • Do you want to be a science writer?

      Read origin stories and advice from over 130 science writers from around the world.
    • Not Exactly Rocket Science content

      RSS Recent Posts

      Recent Posts

      • Random gene sets can predict breast cancer survival better than supposedly cancer-related ones
      • Abnormal brain structures hint at poor self-control and vulnerability to drug addiction
      • Wired UK feature – scanning the Amazon by air
      • The performance will continue after a brief intermission…
      • Science writing I’d pay to read – January 2012
      • Male spider snaps off own genitals inside female to fertilise her remotely, while being eaten
      • Since pythons invaded, Florida’s mammal populations have crashed
      • Prions enter stealth mode in the spleen, causing silent infections
      Categories

      Categories

      Archives

      Archives

      • February 2012
      • January 2012
      • December 2011
      • November 2011
      • October 2011
      • September 2011
      • August 2011
      • July 2011
      • June 2011
      • May 2011
      • April 2011
      • March 2011
      • February 2011
      • January 2011
      • December 2010
      • November 2010
      • October 2010
      • September 2010
      • August 2010
      • July 2010
      • June 2010
      • May 2010
      • April 2010
      • March 2010
      • February 2010
      • January 2010
      • December 2009
      • November 2009
      • October 2009
      • September 2009
      • August 2009
      • July 2009
      • June 2009
      • May 2009
      • April 2009
      • March 2009
      • February 2009
      • January 2009
      • December 2008
      • November 2008
      • October 2008
      • September 2008
      • August 2008
      • July 2008
      • June 2008
      • May 2008
      • April 2008
      • March 2008
      • February 2008
    • RSS Twitter

    • My wife, who makes it all possible

      Alice.jpg
    • Blogroll

      Science blogs

      Science blogs

      • 80 Beats
      • A Blog Around the Clock
      • Adventures in Ethics and Science
      • Aetiology
      • Alice Bell
      • Ars Technica
      • Arthropoda
      • Atlantic Science
      • Babel's Dawn
      • Bad Astronomy
      • Bad Science
      • BPS Research Digest Blog
      • Cancer Research UK Science Update Blog
      • Child's Play
      • Cocktail Party Physics
      • Collision Detection
      • Culture Dish
      • Culturing Science
      • Deep Sea News
      • Discoblog + NCBI ROFL
      • Dot Earth
      • Dr Petra Boynton
      • Drugmonkey
      • EarthLab
      • Embargo Watch
      • Epiphenom
      • Evolving Thoughts
      • Finite Attention Span
      • Fistful of Science
      • Gary Schwitzer's HealthNewsReview
      • Gene Expression
      • Genetic Future
      • Genomeboy
      • Genomicron
      • Gimpy's Blog
      • Highly Allochthonous
      • Ionian Enchantment
      • JL Vernon Presents American Psico
      • Joanne Loves Science
      • John Pavlus
      • Just a Theory
      • Lab Rat
      • Laelaps
      • Last Word on Nothing
      • Lay Scientist
      • Loom
      • Mark Changizi
      • Mind Hacks
      • Myrmecos
      • Neuroanthropology
      • Neurologica
      • Neuron Culture
      • Neurophilosophy
      • Neurotic Physiology (SciCurious)
      • Neurotribes
      • Obesity Panacea
      • Observations of a Nerd
      • On Becoming a Domestic and Laboratory Goddess
      • Open Minds and Parachutes
      • Political Science (Evan Harris)
      • Predictably Irrational
      • Retraction Watch
      • Save Your Breath for Running Ponies
      • Schooner of Science
      • Science Punk
      • ScienceLine
      • ScienceLush
      • Sentence First
      • Sex, Drugs and Rockin' Venom – Confessions of an Extreme Scientist
      • Skepchick
      • Speakeasy Science
      • Superbug
      • Take as Directed
      • Terra Sigillata
      • Tetrapod Zoology
      • The Artful Amoeba
      • The Chicken or the Egg
      • The Examining Room of Dr Charles
      • The Flying Trilobite
      • The Frontal Cortex
      • The Gleaming Retort
      • The Great Beyond
      • The Intersection
      • The Inverse Square Blog
      • The Millikan Daily
      • The Primate Diaries
      • The Science Project
      • Thoughtomics
      • Thus Spake Zuska
      • TYWKIWDBI
      • Vagina Dentata
      • Voyages Around my Camera
      • Weird Bug Lady
      • White Coat Underground
      • Why Evolution is True
      • Wild Muse
      • Wired Science
      • Words of Science
      • XKCD
      • Zooillogix
      Other blogs

      Other blogs

      • Cafe Philos
      • Miss Cellania
    • NetworkedBlogs
      Blog:
      Not Exactly Rocket Science
      Topics:
      science, biology, news
       
      Follow my blog


  • Kalmbach Publishing Co.

    Copyright © 2012, Kalmbach Publishing Co.

    Privacy - Terms - Reader Services - Subscribe Today - Advertise - About Us