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Not Exactly Rocket Science
« Gender gap in maths driven by social factors, not biological differences
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Glowing squid use bacterial flashlights that double as an extra pair of “eyes”

Blogging on Peer-Reviewed ResearchIn the darkness of the deep ocean, some animals create their own light. Among these is the Hawaiian bobtail squid Euprymna scolopes, which forms a partnership with the luminous bacterium Vibrio fischeri. The squid houses colonies of these bacteria in special light organs, and it can control the brightness and direction of their illuminations. But these organs do much more than produce light – they detect it too.

Deyan Tong from the University of Wisconsin has discovered that the organs generate nervous signals when they sense light and they’re loaded with proteins responsible for detecting it. The light organs are effectively an extra set of primitive eyes, each equipped with its own “iris” and “lens”.  The squid comes equipped with a pair of living, ‘seeing’ flashlights.

Scientists have studied the light organ of E.scolopes for over 20 years and its similarity to an actual eye hasn’t gone unnoticed. The core of the organ where the bacteria live is surrounded by a reflective layer of tissue and part of the squid’s ink sac. These can expand and contract like an iris to control how much light escapes the core. The entire package is covered by a thick, transparent tissue – a “lens” – which diffuses the light produced by the bacteria.

The similarities aren’t just superficial ones; these structures contain arrays of proteins that are remarkably similar to their counterparts in actual eyes. Tong analysed the genes that are switched on in the light organs of young E.scolopes. He found 11 that are very similar to those used by proper eyes to convert light into electrical signals. The proteins they produce, such as the visual pigment opsin, arrestin and rhodopsin kinase, strongly resemble their eye counterparts too and are found in the same parts of the light organ.

And as a final piece of evidence, when Tong found that the light organs produced electrical signals when he shone pulses of white light onto them, even when they were devoid of bacteria.

Tong suggests several different uses that the squid could have for its extra pair of light-detectors. For a start, the ability to sense light could be part of a feedback loop that controls the development of the light organ itself. The glow given off by the bacteria is a trigger that tells the organ to switch from a juvenile phase designed to recruit the luminous microbes, to an adult version designed to control their light. The ability to sense light allows the squid to know when to make that switch.

The organ could also be used to detect light from the environment, to help the squid with an act of deception called “counterillumination” where it actually produces light in order to make itself less visible. A small amount of natural light filters down to the depths where it lives, and against these rays, the squid’s silhouette would be obvious to any predator watching from below. To avoid sticking out, the squid gives off light from its underside to match the natural light welling down around it. It’s possible that by functioning as sensors as well as flashlights, the light organs are better equipped to match the natural light around them. 

Most intriguingly, the ability to detect light could help the squid to manage its bacterial partners. Producing light costs energy and groups of luminous bacteria are vulnerable to infiltration by “dark mutants” that gain the benefits of colony life without actually contributing any light of their own. The rise of dark mutants spells trouble for the squid and previous studies have found that juveniles don’t allow these cheaters to stick around. Perhaps the light-detecting ability of their light organs allows them to weed out these slackers.

This is the first study of its kind so it’s impossible to say if the light organs of other squids or indeed, of other deep-sea animals, have similar abilities. For the moment, the most interesting mystery is how the light organs evolved. Given that they share many of the same active genes and proteins, the most enticing possibility is that they arose by co-opting the developmental programmes that produce the squid’s actual eyes.

Reference: PNAS 10.1073/pnas.0904571106

Images: bobtail squid by William Ormerod; eye image from PNAS


The amazing ways in which animals see the world

<p>In the animal kingdom, eyes have evolved dozens of times. We’re familiar with the camera-style eyes in our own heads, and the weird compound eyes of insects, but there are far weirder ones out there. Scientists are discovering new structures and adaptations all the time. There are eyes with mirrors, eyes with optical fibres, and eyes with bifocal lenses. There are eyes that see in the dark, move around heads, or go into sleep mode. <span> </span>There are even eyes made of rock. This slideshow will take you on a tour of some of these recent eye-opening discoveries.</p><p>Eyes don’t even have to be organic. While most animal lenses are made of proteins, the fuzzy chiton – an armoured relative of snails and other molluscs – has <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">lenses made of rock</a>. The lenses are made of aragonite, a type of limestone and the same stuff that the chiton’s shell is made of. These rocky eyes give the chiton a view that’s a thousand times fuzzier than ours, but that’s still good enough to see passing predators. The eyes also erode as the chiton ages, which might explain why it has more than a hundred of them. <span> </span></p>
<p><strong>Read more: </strong><a title="Permanent Link: Chitons see with eyes made of rock" href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">Chitons see with eyes made of rock</a></p><p>Benjamin Franklin is credited with inventing bifocal glasses. These allow wearers to focus on both far and near objects by looking through different parts of the lens. But such lenses have been around for millions of years, on the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">nightmarish face of the sunburst diving beetle</a>. The beetle’s larva has six pairs of eyes, and the front set is unique in the animal kingdom. Each one has one lens and two retinas, one sitting behind and slightly below the other. The lens manages to focus sharp images onto both of them, so the beetle can see near and far objects at the same time, with equal sharpness. Its bifocal lens gives it two eyes for the price of one.</p>
<p><strong>Read more:</strong> <a title="Permanent Link: The beetle with bifocal eyes" href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">The beetle with bifocal eyes</a></p><p>In the deep ocean, the brownsnout spookfish can look up and down at the same time, with some of the animal kingdom’s strangest eyes. Each one is split into two connected parts, so it looks like the spookfish has four eyes. One half points up and the other points down, allowing the fish to look at both sky and abyss simultaneously. The downward eye is unique. Unlike the eyes of all other back-boned animals, which use a lens to focus light, <a href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">this one uses mirrors.</a> It uses hundreds of tiny crystals, arranged in a curved shape, to collect and focus light.</p>
<p>By reflecting light, rather than refracting it, these outer eyes could produce brighter images with higher contrasts that lens-carrying eyes normally would. That must give the fish a great advantage in the deep sea, where the ability to spot even the dimmest and briefest of lights can mean the difference between eating and being eaten.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Spookfish eye uses mirrors instead of a lens" href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">Spookfish eye uses mirrors instead of a lens</a></p><p>The box jellyfish isn’t just a simple blob of goo. It’s an active predator that hunts with 24 eyes. These are clustered into four groups of six. In each cluster, four eyes are simple pits or slits that sense the presence of light. The other two actually see images and they’re remarkably similar to our eyes. They have their own lenses, retinas and corneas, and they’re <a href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">even made using very similar genes</a>. Even though we’re separated by millions of years of evolution, box jellyfish and back-boned animals have evolved eyes by independently recruiting the same building blocks.</p>
<p>The eye clusters are weighed down by heavy crystals so they're always upright, even if the jellyfish is swimming upside-down. This gives the animal <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/28/why-box-jellyfish-always-have-four-eyes-on-the-sky/">a perpetual view of the sky</a>, which allows it to stay close to the mangrove forests where its prey lives.</p>
<p>(<em>Photos by Anders Garm</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Jellyfish and human eyes assembled using similar genetic building blocks" href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">Jellyfish and human eyes assembled using similar genetic building blocks</a></p><p>Mantis shrimps have the arguably the most incredible eyes of any animal. Each eye has three areas that can independently focus on objects, which means that a single mantis shrimp eye has “trinocular vision”. Our eyes have receptors that are tuned to three colours; those of mantis shrimps are tuned to at least twelve. And they can tune individual light-sensitive cells to local light levels.</p>
<p>Mantis shrimps can even see a special type of light – ‘circularly polarised light’ – <a href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing" target="_blank">that no other animal can</a>. This ability allows them to send secret messages, produced by circularly polarised light reflecting off different parts of their shell. The ability hinges on a structure in their eyes that’s <a href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">similar to technology found in our CD and DVD players</a>. The mantis shrimp’s biological engineering completely outclasses our man-made efforts; if we could duplicate it, we could have the basis of tomorrow’s multimedia players and hard drives.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Mantis shrimps have a unique way of seeing" href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing/">Mantis shrimps have a unique way of seeing</a>; <a title="Permanent Link: Mantis shrimp eyes outclass DVD players, inspire new technology" href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">Mantis shrimp eyes outclass DVD players, inspire new technology</a></p><p>When we go to sleep at night, we close our eyes to stop any errant light from disturbing our slumber. But the larvae of zebrafish go one further. They <a href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">shut down their eyes entirely at night</a>, becoming temporarily blind. Their vision only returns when daylight does. Energy is precious to the baby fish and eyes are gas-guzzling appliances, even when they’re set to standby. It makes sense to just shut them off instead.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Pocket Science – chameleons hunt with cold-proof tongues and zebrafish babies go blind at night" href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">Pocket Science –zebrafish babies go blind at night</a></p><p>Even our own familiar eyes have hidden surprises. In 2009, scientists found that we’re all <a href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">carrying living optic fibres called Muller cells</a>. These cells help to get round a structural problem in our eyes, where the light-sensing cells of the retina lie behind a tangled mass of nerves and blood vessels. It’s a bit like designing a camera, and sticking the wiring in front of the lens. Light gets through the mess inside the long, cylindrical Muller cells. It reflects down the cell, much like in an optic fibre, to hit the light-sensing cells on the other side. (<em>Image by <a href="http://commons.wikimedia.org/wiki/File:Human_left_eye-8.jpg">Elyzhium</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Living optic fibres bypass the retina’s incompetent design" href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">Living optic fibres bypass the retina’s incompetent design</a></p><p>Many mammals have evolved eyes that can see in the dark. That involves more than just becoming bigger. Their eyes have more light-sensitive rod cells, and these cells have changed at a microscopic level. They have converted the nucleus at the middle of each cell <a href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">into a light-collecting lens</a>.</p>
<p>In almost all complex cells, DNA is tightly packed around the edge of the nucleus but lightly packed towards its middle. But in the rod cells of nocturnal mammals, it’s the other way round. This inverted arrangement collects light that hits the rod cells and funnels it through to the retina underneath. By moving its DNA around, each cell has become a little optic fibre.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Nocturnal mammals see in dark by turning displaced DNA into lenses" href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">Nocturnal mammals see in dark by turning displaced DNA into lenses</a></p><p>Like many species that live in perpetual darkness, the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">blind cavefish has lost its eyes</a>. These fish have evolved from sighted ancestors <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/07/sleepless-in-mexico-%E2%80%93-three-cavefish-groups-independently-evolved-to-lose-sleep/">on several occasions in</a> different Mexican caves. Their eyes have degenerated over a million years of darkness, but their blindness can be easily reversed by a spot of clever breeding. Many genes govern the development of eyes, and different populations of cavefish have lost their vision by disrupting different eye genes. By breeding individuals from different caves, working genes from one parent can compensate for broken ones from another. The result: babies that can see. (<em>Photo by <a href="http://www.flickr.com/photos/skippy/75380086/sizes/z/in/photostream/">skpy</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Cross-breeding restores sight to blind cavefish" href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">Cross-breeding restores sight to blind cavefish</a></p><p>As babies, flatfishes like plaice and flounders look like every other fish. But as they grow up, one of their eyes moves to the other side of their heads. This allows the adults to lie flat on their sides without getting an eyeful of sand. The evolution of these grotesque fish is <a href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">beautifully captured by a fossil called Heteronectes</a>. It’s a half-committed flatfish. One of its eyes has begun migrating to the other side of its head but hasn’t made it all the way – it stops at the midline. We couldn’t have wished for a better intermediate form – it’s half-way between the standard fish body plan and the distorted visages of flounders and soles.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Early flatfish has eye that’s moved halfway across its head" href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">Early flatfish has eye that’s moved halfway across its head</a></p><p>The Hawaiian bobtail squid creates its own light, using special organs filled with glowing bacteria. But these organs don’t just produce light – <a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">they sense it too</a>. They are loaded with proteins that can detect light, and they produce nervous signals in bright conditions. They can expand and contract like an iris to control how much light gets through. They’re covered with a thick, transparent tissue that acts like a “lens”. The light organs are effectively an extra set of primitive eyes. They are living, ‘seeing’ flashlights. (<strong><em><span style="font-family: &quot;Calibri&quot;,&quot;sans-serif&quot;; font-weight: normal;">Image by </span></em></strong><em>William Ormerod</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">Glowing squid use bacterial flashlights that double as an extra pair of “eyes”</a></p>
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June 2nd, 2009 Tags: Bacteria, bioluminescence, bobtail, light organs, squid, Vibrio fischeri
by Ed Yong in Animal behaviour, Animal defences, Animals, Cephalopods, Evolution, Eye evolution, Invertebrates | 8 comments | RSS feed | Trackback >

8 Responses to “Glowing squid use bacterial flashlights that double as an extra pair of “eyes””

  1. 1.   Mystyk Says:
    June 2nd, 2009 at 1:25 pm

    I’m not 100% certain, but I’ve got a feeling that the above-the-fold image is of a species of cuttlefish, and not the squid in question. The below-the-fold picture, on the other hand, does appear proper.

  2. 2.   Ed Yong Says:
    June 2nd, 2009 at 3:47 pm

    The top image came from a previous story I did about the bobtail. I think it’s legit. A quick Google image search for Hawaiian bobtail squid seems to confirm this. The bottom image comes from the paper.

  3. 3.   Lilian Nattel Says:
    June 2nd, 2009 at 10:27 pm

    I enjoyed reading this. Sometimes I don’t comment because I don’t really have anything to contribute other than that I found it very interesting–but I didn’t want to let this go by without saying anything because I wouldn’t want to imply it was less engrossing than other posts simply because I have less to say!

  4. 4.   Dunbar Says:
    June 3rd, 2009 at 9:23 am

    I went to a talk by Margaret McFall-Ngai once, and she had that picture of bobtail squid. Actually, I think it’s the only real picture of bobtail squid on the Internet. I can see why one might think it’s a cuttlefish with that extra flap of tissue, but maybe it’s something to do with it being a juvenile.

  5. 5.   Michael Simpson Says:
    June 3rd, 2009 at 1:53 pm

    PZ Meyers ought to love this article for two reasons: it honors his well-known fetish for all things cephalopod, while adding a strong piece of evidence against the evolution deniers.

  6. 6.   Nathan Myers Says:
    June 6th, 2009 at 1:32 am

    Previously we had pointed to cephalopods as an example of eyes that evolved independently and convergently. Now we find they did it twice.

  7. 7.   Kevin Zelnio Says:
    June 12th, 2009 at 2:32 am

    I lectured on the Squid-Vibrio symbiosis as a model system for bioluminescent symbioses for a course on Symbioses. Only a couple years ago and I taught it was for counterillumination. Great to see the research continue on this amazing system! McFall-Ngai has a done a great job coordinating research on this system.
    These squid aren’t very deep dwellers though. They bury themselves in the sand and come out in the evenings to the surface. It is “lit” from the bottom and the counterillumination matches downwelling moonlight/starlight. So it looks like the sky from below!
    What I always found fascinating is that the symbiont and the host change in morphology once the symbiosis is initiated. Squid raised without the symbiont (the Vibrio is acquired environmentally) do not change.

  8. 8.   Xenobio Says:
    February 10th, 2011 at 12:12 pm

    I went to a thesis talk by a student from this lab, they found that the light organs are similar to eyes during the developmental process in the baby larval squid as well…don’t remember the details haha it was a while ago.

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