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Not Exactly Rocket Science

Archive for April, 2011

« Older Entries

I’ve got your missing links right here (30 April 2011)

Top thirteen picks

Euthanasia Coaster – how to design an actual killer coaster, by Jennifer Ouellette. Note, this post features Fabio vs a goose

Smash moons together rip Saturn’s rings off destroy universes yeeaaahhhhhhhhhhhhh

A neurologist finishes his last paper, on the disease that’s killing him.

Beautiful stuff about lyrebirds as historians, by Robert Kruylwich. Nature’s Living Tape Recorders May Be Telling Us Secrets. This is how it’s done, folks.

Inspired and appalled by this atrocity from Cell, I give you Not Exactly Royal Wedding Science. Now can we all please shut up about it? Except for Heather Pringle and John Rennie who have provided some wonderful tie-ins – one on inbreeding among bees and another involving axe murders and death pits

“One of the most important decisions a writer makes is one a reader never sees” – to do a story or not. I couldn’t agree more with Paul Raeburn that the New York Times’s profile of Andrew Wakefield (another one?) is a story that shouldn’t have been written.

Tiger Moms v Orchid Children. A post about nature of nurturance and resilience, by David Dobbs.

How sorting out hookworm infections boosted the economy of the southern US. (This looks like a fascinating new blog)

Jonah Lehrer makes the psychological case for knowing more about wine

Is it possible to analyze DNA from Egyptian mummies? Jo Marchant investigates.

Measles: it’s incredibly hard and expensive to stop. Here’s Maryn McKenna vividly describing the cost of vaccine refusal.

Absolutely stunning origami X-ray animals

In tribute to the legendary Tom Eisner, Jennifer Frazer’s takes us on a tour of the chemical world of insects & plants, featuring bombardier beetles, bolas spiders and more

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April 30th, 2011 by Ed Yong in Links | 5 Comments » | RSS feed | Trackback >

In African rivers, an electric Tower of Babel

The rivers and lakes of Africa are filled with conversations that you cannot hear or take part in. These chats are conducted by fishes called mormyrids or elephantfishes, which can produce and sense electric fields. They use their abilities to navigate through murky waters, hunt their prey, and talk to one another. It’s clearly a successful lifestyle, for there are over 200 species of mormyrid alive today.

Bruce Carlson from Washington University in St Louis thinks that the origin of these diverse species lay in the diversity of their electric songs. Different species of mormyrid communicate with different electric signals, which work as badges of identity. When they’re ready to mate, they find partners of their own kind by listening out for their preferred electric dialect.

The evolution of these diverse signals hinged in turn on changes in the mormyrids’ brains and sense organs. These allowed them to pick up subtler differences in their electric signals and talk to each other in more varied ways. This opened up a world of communication, but it was also the mormyrid equivalent of the Tower of Babel. By gaining the ability to communicate in different dialects, the species of mormyrid grew apart.

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April 28th, 2011 by Ed Yong in Animal behaviour, Animal communication, Animal senses, Animals, Evolution, Fish, Speciation | 3 Comments » | RSS feed | Trackback >

Why box jellyfish always have four eyes on the sky

In the mangrove swamps of Puerto Rico, four eyes are permanently fixed on the sky. These eyes are surprisingly similar to yours. They’re assembled using the same genetic building blocks, and they have lenses, retinas and corneas. But their owner couldn’t be more different – it’s a box jellyfish, and it’s looking for some shade.

The box jellyfish (Tripedalia cystophora) is far from a simple blob with tentacles. It’s an active, manoeuvrable predator, and it finds its way around with no fewer than 24 eyes. Scientists have known about these for over a century, but people are still trying to work out what they do.

The eyes are grouped into four clusters called rhopalia, each containing six eyes. Four of these are simple pits or slit that can do little more than detect the presence of light. But the other two – the “upper lens eye” and “lower lens eye” – are far more advanced. They can actually see images, with the aid of light-focusing lenses.

Now, Anders Garm from the University of Copenhagen has found that the jellyfish always keeps its upper lens eyes pointing towards the sky. Each rhopalia sits at the end of a flexible stalk. The upper lens eye sits at the top of the cluster, and there is a heavy crystal called a statolith on the bottom. The whole structure is a weighted ball, dangling from a string. As a result, it’s always vertical and the upper lens eyes are always pointing upwards, no matter how the jellyfish’s body is angled. This animal is perpetually looking straight up, even if it’s swimming upside-down.

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April 28th, 2011 by Ed Yong in Animal behaviour, Animal senses, Animals, Evolution, Eye evolution, Invertebrates | 3 Comments » | RSS feed | Trackback >

The eyes have it – incredible ways of seeing the world

<p>In the animal kingdom, eyes have evolved dozens of times. We’re familiar with the camera-style eyes in our own heads, and the weird compound eyes of insects, but there are far weirder ones out there. Scientists are discovering new structures and adaptations all the time. There are eyes with mirrors, eyes with optical fibres, and eyes with bifocal lenses. There are eyes that see in the dark, move around heads, or go into sleep mode. <span> </span>There are even eyes made of rock. This slideshow will take you on a tour of some of these recent eye-opening discoveries.</p><p>Eyes don’t even have to be organic. While most animal lenses are made of proteins, the fuzzy chiton – an armoured relative of snails and other molluscs – has <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">lenses made of rock</a>. The lenses are made of aragonite, a type of limestone and the same stuff that the chiton’s shell is made of. These rocky eyes give the chiton a view that’s a thousand times fuzzier than ours, but that’s still good enough to see passing predators. The eyes also erode as the chiton ages, which might explain why it has more than a hundred of them. <span> </span></p>
<p><strong>Read more: </strong><a title="Permanent Link: Chitons see with eyes made of rock" href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">Chitons see with eyes made of rock</a></p><p>Benjamin Franklin is credited with inventing bifocal glasses. These allow wearers to focus on both far and near objects by looking through different parts of the lens. But such lenses have been around for millions of years, on the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">nightmarish face of the sunburst diving beetle</a>. The beetle’s larva has six pairs of eyes, and the front set is unique in the animal kingdom. Each one has one lens and two retinas, one sitting behind and slightly below the other. The lens manages to focus sharp images onto both of them, so the beetle can see near and far objects at the same time, with equal sharpness. Its bifocal lens gives it two eyes for the price of one.</p>
<p><strong>Read more:</strong> <a title="Permanent Link: The beetle with bifocal eyes" href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">The beetle with bifocal eyes</a></p><p>In the deep ocean, the brownsnout spookfish can look up and down at the same time, with some of the animal kingdom’s strangest eyes. Each one is split into two connected parts, so it looks like the spookfish has four eyes. One half points up and the other points down, allowing the fish to look at both sky and abyss simultaneously. The downward eye is unique. Unlike the eyes of all other back-boned animals, which use a lens to focus light, <a href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">this one uses mirrors.</a> It uses hundreds of tiny crystals, arranged in a curved shape, to collect and focus light.</p>
<p>By reflecting light, rather than refracting it, these outer eyes could produce brighter images with higher contrasts that lens-carrying eyes normally would. That must give the fish a great advantage in the deep sea, where the ability to spot even the dimmest and briefest of lights can mean the difference between eating and being eaten.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Spookfish eye uses mirrors instead of a lens" href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">Spookfish eye uses mirrors instead of a lens</a></p><p>The box jellyfish isn’t just a simple blob of goo. It’s an active predator that hunts with 24 eyes. These are clustered into four groups of six. In each cluster, four eyes are simple pits or slits that sense the presence of light. The other two actually see images and they’re remarkably similar to our eyes. They have their own lenses, retinas and corneas, and they’re <a href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">even made using very similar genes</a>. Even though we’re separated by millions of years of evolution, box jellyfish and back-boned animals have evolved eyes by independently recruiting the same building blocks.</p>
<p>The eye clusters are weighed down by heavy crystals so they're always upright, even if the jellyfish is swimming upside-down. This gives the animal <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/28/why-box-jellyfish-always-have-four-eyes-on-the-sky/">a perpetual view of the sky</a>, which allows it to stay close to the mangrove forests where its prey lives.</p>
<p>(<em>Photos by Anders Garm</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Jellyfish and human eyes assembled using similar genetic building blocks" href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">Jellyfish and human eyes assembled using similar genetic building blocks</a></p><p>Mantis shrimps have the arguably the most incredible eyes of any animal. Each eye has three areas that can independently focus on objects, which means that a single mantis shrimp eye has “trinocular vision”. Our eyes have receptors that are tuned to three colours; those of mantis shrimps are tuned to at least twelve. And they can tune individual light-sensitive cells to local light levels.</p>
<p>Mantis shrimps can even see a special type of light – ‘circularly polarised light’ – <a href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing" target="_blank">that no other animal can</a>. This ability allows them to send secret messages, produced by circularly polarised light reflecting off different parts of their shell. The ability hinges on a structure in their eyes that’s <a href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">similar to technology found in our CD and DVD players</a>. The mantis shrimp’s biological engineering completely outclasses our man-made efforts; if we could duplicate it, we could have the basis of tomorrow’s multimedia players and hard drives.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Mantis shrimps have a unique way of seeing" href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing/">Mantis shrimps have a unique way of seeing</a>; <a title="Permanent Link: Mantis shrimp eyes outclass DVD players, inspire new technology" href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">Mantis shrimp eyes outclass DVD players, inspire new technology</a></p><p>When we go to sleep at night, we close our eyes to stop any errant light from disturbing our slumber. But the larvae of zebrafish go one further. They <a href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">shut down their eyes entirely at night</a>, becoming temporarily blind. Their vision only returns when daylight does. Energy is precious to the baby fish and eyes are gas-guzzling appliances, even when they’re set to standby. It makes sense to just shut them off instead.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Pocket Science – chameleons hunt with cold-proof tongues and zebrafish babies go blind at night" href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">Pocket Science –zebrafish babies go blind at night</a></p><p>Even our own familiar eyes have hidden surprises. In 2009, scientists found that we’re all <a href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">carrying living optic fibres called Muller cells</a>. These cells help to get round a structural problem in our eyes, where the light-sensing cells of the retina lie behind a tangled mass of nerves and blood vessels. It’s a bit like designing a camera, and sticking the wiring in front of the lens. Light gets through the mess inside the long, cylindrical Muller cells. It reflects down the cell, much like in an optic fibre, to hit the light-sensing cells on the other side. (<em>Image by <a href="http://commons.wikimedia.org/wiki/File:Human_left_eye-8.jpg">Elyzhium</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Living optic fibres bypass the retina’s incompetent design" href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">Living optic fibres bypass the retina’s incompetent design</a></p><p>Many mammals have evolved eyes that can see in the dark. That involves more than just becoming bigger. Their eyes have more light-sensitive rod cells, and these cells have changed at a microscopic level. They have converted the nucleus at the middle of each cell <a href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">into a light-collecting lens</a>.</p>
<p>In almost all complex cells, DNA is tightly packed around the edge of the nucleus but lightly packed towards its middle. But in the rod cells of nocturnal mammals, it’s the other way round. This inverted arrangement collects light that hits the rod cells and funnels it through to the retina underneath. By moving its DNA around, each cell has become a little optic fibre.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Nocturnal mammals see in dark by turning displaced DNA into lenses" href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">Nocturnal mammals see in dark by turning displaced DNA into lenses</a></p><p>Like many species that live in perpetual darkness, the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">blind cavefish has lost its eyes</a>. These fish have evolved from sighted ancestors <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/07/sleepless-in-mexico-%E2%80%93-three-cavefish-groups-independently-evolved-to-lose-sleep/">on several occasions in</a> different Mexican caves. Their eyes have degenerated over a million years of darkness, but their blindness can be easily reversed by a spot of clever breeding. Many genes govern the development of eyes, and different populations of cavefish have lost their vision by disrupting different eye genes. By breeding individuals from different caves, working genes from one parent can compensate for broken ones from another. The result: babies that can see. (<em>Photo by <a href="http://www.flickr.com/photos/skippy/75380086/sizes/z/in/photostream/">skpy</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Cross-breeding restores sight to blind cavefish" href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">Cross-breeding restores sight to blind cavefish</a></p><p>As babies, flatfishes like plaice and flounders look like every other fish. But as they grow up, one of their eyes moves to the other side of their heads. This allows the adults to lie flat on their sides without getting an eyeful of sand. The evolution of these grotesque fish is <a href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">beautifully captured by a fossil called Heteronectes</a>. It’s a half-committed flatfish. One of its eyes has begun migrating to the other side of its head but hasn’t made it all the way – it stops at the midline. We couldn’t have wished for a better intermediate form – it’s half-way between the standard fish body plan and the distorted visages of flounders and soles.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Early flatfish has eye that’s moved halfway across its head" href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">Early flatfish has eye that’s moved halfway across its head</a></p><p>The Hawaiian bobtail squid creates its own light, using special organs filled with glowing bacteria. But these organs don’t just produce light – <a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">they sense it too</a>. They are loaded with proteins that can detect light, and they produce nervous signals in bright conditions. They can expand and contract like an iris to control how much light gets through. They’re covered with a thick, transparent tissue that acts like a “lens”. The light organs are effectively an extra set of primitive eyes. They are living, ‘seeing’ flashlights. (<strong><em><span style="font-family: &quot;Calibri&quot;,&quot;sans-serif&quot;; font-weight: normal;">Image by </span></em></strong><em>William Ormerod</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">Glowing squid use bacterial flashlights that double as an extra pair of “eyes”</a></p>
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April 27th, 2011 by Ed Yong in Animal behaviour, Animal senses, Animals, Evolution, Eye evolution, Select | 12 Comments » | RSS feed | Trackback >

Individual neurons go to sleep while rats stay awake

We all know people who look like they can nod off with their eyes open. These exceptions aside, we generally think of sleep as a switch with two settings – you’re either asleep or awake. But Vladyslav Vyazovskiy from the University of Wisconsin-Madison has found that sleep is more complicated than that.

By studying the brains of sleep-deprived rats, Vyazovskiy found that individual neurons can effectively fall asleep, going “offline” while those around them carrying on firing. Even if the rats are awake, parts of their brain can be taking a nap. What we know as “sleep” is the global version of something that happens throughout the brain at a local level.

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April 27th, 2011 by Ed Yong in Neuroscience and psychology, Sleep | 2 Comments » | RSS feed | Trackback >

IQ scores reflect motivation as well as ‘intelligence’

Ever since there have been IQ tests, people have debated what they actually measure. Is it “intelligence”, is it an abstract combination of mental abilities, or is it, as Edwin Boring said, “the capacity to do well in an intelligence test”? Regardless of the answer, studies have repeatedly shown that people who achieve higher scores in IQ tests are more likely to do well in school, perform well in their jobs, earn more money, avoid criminal convictions, and even live longer. Say what you like about the tests, but they have predictive power.

However, Angela Lee Duckworth from the University of Pennsylvania has found that this power is overrated. The link between our IQs and our fates becomes muddier when we consider motivation – an aspect of test-taking that is often ignored. Simply put, some people try harder in IQ tests than others. If you take this into account, the association between your IQ and your success in life becomes considerably weaker. The tests are not measuring intelligence alone, but also the desire to prove it.

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April 26th, 2011 Tags: intelligence, IQ, tests
by Ed Yong in Neuroscience and psychology | 13 Comments » | RSS feed | Trackback >

The real story about space bacteria

Of late, space and bacteria have been in the news for all the wrong reasons. First, there was the wanton speculation about aliens that preceded the “arsenic life” controversy (NASA fanned the hype with a poorly described press conference). Then, the Journal of Cosmology made headlines with claims about fossilised bacteria in meteorites (NASA disavowed any participation).

But to me, the real story involving space, bacteria and NASA is very different, but far more important. The gist is simple: when bacteria are sent into space, they become better at causing disease. This poses a big problem for the long-term space missions planned in the future, but cracking that problem could have big benefits for public health back on the ground.

I’ve told this story in a feature for this month’s Wired UK, which has finally come online. The feature focuses on Cheryl Nickerson, an American scientist who is spearheading research in this field. I talk about Nickerson’s motivations, her latest fascinating results on how bacteria change in space, why this has already been a problem for space missions and why it’ll get worse, what it’s like to do science in space, and finally, what this means for human health back on Earth. Here’s a taster:

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April 26th, 2011 by Ed Yong in Bacteria, Personal | 9 Comments » | RSS feed | Trackback >

Fire ants assemble into living waterproof rafts

What happens when you dump 8,000 fire ants into a tray of water? Nathan Mlot from the Georgia Institute of Technology wanted to find out. Mlot scooped the ants into a beaker, swirled it around to roll them into a ball, and decanted them into a half-filled tray.

Over the next three minutes, the ball of ants slowly widened and flattened into a living, waterproof raft. By trapping air bubbles trapped among their interlocking bodies, the ants boosted their natural ability to repel water and kept themselves afloat. Humans build rafts by lashing together planks of wood or reeds; the fire ants do so by holding onto each other.

The experiment might seem odd, but it mirrors conditions that the fire ant (Solenopsis invicta) regularly has to cope with in its natural environment. The ant hails from the Brazilian rainforest floodplains of Argentina, where rising water regularly submerges their nests. They respond by weaving their own bodies into rafts. The ants also come together to construct bridges, ladders and walls, but the rafts are the longest-lasting of these living structures. In this form, they can float and sail for months.

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April 25th, 2011 by Ed Yong in Animal behaviour, Animals, Ants, Bioinspiration, Cooperation, Insects, Invertebrates | 12 Comments » | RSS feed | Trackback >

I’ve got your missing links right here (23 April 2011)

Top twelve picks

Adam Rutherford’s documentary The Gene Code was an utter triumph – complex and cutting-edge science rendered clear and compelling. Let’s pause for a second and note that the UK is a country where we talk about Archaea and recombination in detail on national TV. For this alone, Adam is my hero.

Eric Michael Johnson’s superb piece on chimps, bonobos, the Tempest and the “killer ape” concept is one of the highlights of the week. David Dobbs’s follow-up is well worth your time too.

Brian Switek is on incredible form this week with no fewer than four superb posts: on primate “grief”, on the evolution of mammal ear bones from reptile jaws (with the perfect headline), on the world’s oldest toothache, and on exhorting people to stop comparing every dino to T.rex. I have immortalised his sentiments in T-shirt form.

Chris Mooney writes about the science of science denial for Mother Jones.

Tigers Are Less Important Than Warblers. A wonderful, witty and compelling piece by Madhusudan Katti.

“Well-read isn’t a destination; there is nowhere to get to.” Linda Holmes urges you to embrace sweet surrender

This excellent piece looks like it’s about roller-derby, and then morphs into an awesome medical story. By Sally Adee.

Eric Kandel uses the HHMI iPad app, featuring the sea slugs he works on. A wonderful cheeky film by John Pavlus.

A really good explanation of that retina-in-a-dish paper by Ambivalent Academic at Scicurious’s blog.

Warming up, turning sour, losing breath – Carl Zimmer on the fate of the world’s oceans

In Brazil, scientist saves forests with data. Great positive story for Earth Day (tomorrow), by Thomas Hayden.

“I did not see a dinosaur you call yourself a museum!” 10-yr-old Annabelle complains to MOMA.

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April 23rd, 2011 by Ed Yong in Links | 8 Comments » | RSS feed | Trackback >

The many yous in you – what Lydia Fairchild has in common with a sponge and an anemone

Lydia Fairchild was confused. She had applied for state benefits to look after her three children, but according to DNA tests, she was not their mother. It was ridiculous – she knew full well that the children were hers, but she was being taken to court nonetheless.

This happened in 2002, but Fairchild’s case has striking parallels with one that cropped up just this year, involving a Mediterranean sponge called Scopalina lophyropoda. French scientists Andrea Blanquer and Maria-J Uriz found that around a quarter of the sponge’s larvae are genetically distinct from the parents that they come from. Somehow, they had inherited genes from a different source.

Sponges are about as far away from humans as you could imagine an animal being – their bodies are just two layers of cells, curved and folded into tubes and chambers. But even though their bodies are worlds apart, the mysteries of both Lydia Fairchild and S.lophyropoda had the same answer.

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April 21st, 2011 by Ed Yong in Animal behaviour, Animals, Genetics, Invertebrates, Sex and reproduction | 5 Comments » | RSS feed | Trackback >

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