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Not Exactly Rocket Science
« Science writing I’d pay to read – April 2011
Thylacine was more Tasmanian tiger than marsupial wolf »

Sea urchins use their entire body as an eye

Purple sea urchins look like beautiful pincushions. They have no obvious eyes among their purple spines, but they can still respond to light. If you shine a spotlight on one, it will sidle off to somewhere darker. Clearly, the purple sea urchin can see, and over the past few years, scientists have worked out how: its entire body is an eye.

For decades, scientists knew that sea urchins can respond to light, even though they don’t have anything that looks remotely like an eye. The mystery deepened in 2006, when the full genome of the purple sea urchin was published. To everyone’s surprise, its 23,000 genes included several that are associated with eyes. The urchin has its own version of the master gene Pax6, which governs the development of animal eyes from humans to flies. It also has six genes for light-sensitive proteins called opsins.

While these genes are usually switched on in the developing eye, Maria Arnone found that the sea urchin’s versions are strongly activated in its feet. Sea urchins have hundreds of “tube feet”, small cylinders that sway around amid the spines. They can use the feet to move around, to manipulate food, and apparently to see.

Esther Ullrich-Luter – one of Arnone’s collaborators – found that each foot has two clusters of light-sensitive cells: one at the tip and another at its base. Each foot has up to 140 of these cells, giving a total of 200,000 across the entire animal. (For comparison, humans have a thousand times as many.)

The light-sensitive cells connect to a single nerve running down the length of each foot. The nerves of the tube feet eventually cluster into five spokes, which meet at a central ring of nerves. This is the extent of the urchin’s nervous system – it’s a sparse network of nerves without any central brain. Through this network, the sea urchin detects can react to light, which it spots with its hundreds of feet.  Its entire surface is effectively a big compound eye.

These discoveries revealed how the urchin sees, but they raised a new mystery. The urchin can clearly tell where a source of light is coming from, because it can move in the opposite direction. But the tube feet move about a lot, so they ought to pick up light from almost all directions. How can the urchin sense the direction of light?

Sönke Johnsen suggested that answer lies in the urchin’s spines , which shade specific parts of its body. That might be true, but Ullrich-Luter has found that another body part provides the necessary shade – the skeleton. Sea urchins have a hard internal shell within their body. The nerves of the tube feet pass through pores in this shell, and next to these pores, there are small dents. Some of the urchin’s light-sensitive cells lie within these dents (the red patches in the image below). These clusters are shaded from most directions – only a few cells are hit by light at any one time. By using the shadow of its own skeleton, the sea urchin can work out where a source of light is coming from.

Ullrich-Luter confirmed her idea by showing that baby sea urchins, which haven’t grown a skeleton, don’t shy away from light. Their skeletons only develop a month into their life, and their tendency to steer clear of light turns up at the same time.

If the idea of hundreds of foot-eyes that see using skeletal shadows wasn’t weird enough, the sea urchin’s odd eyes hold one last mystery – they seem to be built from the wrong parts. There are two major branches of the animal family tree and, until recently, it seemed that each branch built their eyes using one of two light-sensitive cells. The “protostomes” including insects and other arthropods have “rhabdomeric” light sensors, while the “deuterostomes”, including us and other back-boned animals, have “ciliary” sensors.

The sea urchin has the rhabdomeric type, which is very strange because it’s a deuterostome – it’s more closely related to us than to any fly or spider. There are a few examples of rhabdomeric cells in vertebrates, but they’re not used for vision – they’re mostly used to control body clocks. The purple sea urchin is the exception. It suggests that rhabdomeric light-detectors have been the norm for eyes, throughout much of the animal kingdom’s history. Only in the vertebrates have these cells abandoned their old roles, which were taken up by the ciliary cells.

Reference: Ullrich-Lüter, Dupont, Arboleda, Hausen & Arnone. 2011. Unique system of photoreceptors in sea urchin tube feet. PNAS http://dx.doi.org/10.1073/pnas.1018495108

Photos: by Maria Arnone and Minette Layne


A gallery of amazing animal eyes

<p>In the animal kingdom, eyes have evolved dozens of times. We’re familiar with the camera-style eyes in our own heads, and the weird compound eyes of insects, but there are far weirder ones out there. Scientists are discovering new structures and adaptations all the time. There are eyes with mirrors, eyes with optical fibres, and eyes with bifocal lenses. There are eyes that see in the dark, move around heads, or go into sleep mode. <span> </span>There are even eyes made of rock. This slideshow will take you on a tour of some of these recent eye-opening discoveries.</p><p>Eyes don’t even have to be organic. While most animal lenses are made of proteins, the fuzzy chiton – an armoured relative of snails and other molluscs – has <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">lenses made of rock</a>. The lenses are made of aragonite, a type of limestone and the same stuff that the chiton’s shell is made of. These rocky eyes give the chiton a view that’s a thousand times fuzzier than ours, but that’s still good enough to see passing predators. The eyes also erode as the chiton ages, which might explain why it has more than a hundred of them. <span> </span></p>
<p><strong>Read more: </strong><a title="Permanent Link: Chitons see with eyes made of rock" href="http://blogs.discovermagazine.com/notrocketscience/2011/04/14/chitons-see-with-eyes-made-of-rock/">Chitons see with eyes made of rock</a></p><p>Benjamin Franklin is credited with inventing bifocal glasses. These allow wearers to focus on both far and near objects by looking through different parts of the lens. But such lenses have been around for millions of years, on the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">nightmarish face of the sunburst diving beetle</a>. The beetle’s larva has six pairs of eyes, and the front set is unique in the animal kingdom. Each one has one lens and two retinas, one sitting behind and slightly below the other. The lens manages to focus sharp images onto both of them, so the beetle can see near and far objects at the same time, with equal sharpness. Its bifocal lens gives it two eyes for the price of one.</p>
<p><strong>Read more:</strong> <a title="Permanent Link: The beetle with bifocal eyes" href="http://blogs.discovermagazine.com/notrocketscience/2010/08/29/the-beetle-with-bifocal-eyes/">The beetle with bifocal eyes</a></p><p>In the deep ocean, the brownsnout spookfish can look up and down at the same time, with some of the animal kingdom’s strangest eyes. Each one is split into two connected parts, so it looks like the spookfish has four eyes. One half points up and the other points down, allowing the fish to look at both sky and abyss simultaneously. The downward eye is unique. Unlike the eyes of all other back-boned animals, which use a lens to focus light, <a href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">this one uses mirrors.</a> It uses hundreds of tiny crystals, arranged in a curved shape, to collect and focus light.</p>
<p>By reflecting light, rather than refracting it, these outer eyes could produce brighter images with higher contrasts that lens-carrying eyes normally would. That must give the fish a great advantage in the deep sea, where the ability to spot even the dimmest and briefest of lights can mean the difference between eating and being eaten.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Spookfish eye uses mirrors instead of a lens" href="http://blogs.discovermagazine.com/notrocketscience/2008/12/30/spookfish-eye-uses-mirrors-instead-of-a-lens/">Spookfish eye uses mirrors instead of a lens</a></p><p>The box jellyfish isn’t just a simple blob of goo. It’s an active predator that hunts with 24 eyes. These are clustered into four groups of six. In each cluster, four eyes are simple pits or slits that sense the presence of light. The other two actually see images and they’re remarkably similar to our eyes. They have their own lenses, retinas and corneas, and they’re <a href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">even made using very similar genes</a>. Even though we’re separated by millions of years of evolution, box jellyfish and back-boned animals have evolved eyes by independently recruiting the same building blocks.</p>
<p>The eye clusters are weighed down by heavy crystals so they're always upright, even if the jellyfish is swimming upside-down. This gives the animal <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/28/why-box-jellyfish-always-have-four-eyes-on-the-sky/">a perpetual view of the sky</a>, which allows it to stay close to the mangrove forests where its prey lives.</p>
<p>(<em>Photos by Anders Garm</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Jellyfish and human eyes assembled using similar genetic building blocks" href="http://blogs.discovermagazine.com/notrocketscience/2008/06/16/jellyfish-and-human-eyes-assembled-using-similar-genetic-building-blocks/">Jellyfish and human eyes assembled using similar genetic building blocks</a></p><p>Mantis shrimps have the arguably the most incredible eyes of any animal. Each eye has three areas that can independently focus on objects, which means that a single mantis shrimp eye has “trinocular vision”. Our eyes have receptors that are tuned to three colours; those of mantis shrimps are tuned to at least twelve. And they can tune individual light-sensitive cells to local light levels.</p>
<p>Mantis shrimps can even see a special type of light – ‘circularly polarised light’ – <a href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing" target="_blank">that no other animal can</a>. This ability allows them to send secret messages, produced by circularly polarised light reflecting off different parts of their shell. The ability hinges on a structure in their eyes that’s <a href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">similar to technology found in our CD and DVD players</a>. The mantis shrimp’s biological engineering completely outclasses our man-made efforts; if we could duplicate it, we could have the basis of tomorrow’s multimedia players and hard drives.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Mantis shrimps have a unique way of seeing" href="http://blogs.discovermagazine.com/notrocketscience/2008/03/21/mantis-shrimps-have-a-unique-way-of-seeing/">Mantis shrimps have a unique way of seeing</a>; <a title="Permanent Link: Mantis shrimp eyes outclass DVD players, inspire new technology" href="http://blogs.discovermagazine.com/notrocketscience/2009/10/25/mantis-shrimp-eyes-outclass-dvd-players-inspire-new-technology/">Mantis shrimp eyes outclass DVD players, inspire new technology</a></p><p>When we go to sleep at night, we close our eyes to stop any errant light from disturbing our slumber. But the larvae of zebrafish go one further. They <a href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">shut down their eyes entirely at night</a>, becoming temporarily blind. Their vision only returns when daylight does. Energy is precious to the baby fish and eyes are gas-guzzling appliances, even when they’re set to standby. It makes sense to just shut them off instead.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Pocket Science – chameleons hunt with cold-proof tongues and zebrafish babies go blind at night" href="http://blogs.discovermagazine.com/notrocketscience/2010/03/09/pocket-science-chameleons-hunt-with-cold-proof-tongues-and-zebrafish-babies-go-blind-at-night/">Pocket Science –zebrafish babies go blind at night</a></p><p>Even our own familiar eyes have hidden surprises. In 2009, scientists found that we’re all <a href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">carrying living optic fibres called Muller cells</a>. These cells help to get round a structural problem in our eyes, where the light-sensing cells of the retina lie behind a tangled mass of nerves and blood vessels. It’s a bit like designing a camera, and sticking the wiring in front of the lens. Light gets through the mess inside the long, cylindrical Muller cells. It reflects down the cell, much like in an optic fibre, to hit the light-sensing cells on the other side. (<em>Image by <a href="http://commons.wikimedia.org/wiki/File:Human_left_eye-8.jpg">Elyzhium</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Living optic fibres bypass the retina’s incompetent design" href="http://blogs.discovermagazine.com/notrocketscience/2009/02/08/living-optic-fibres-bypass-the-retinas-incompetent-design/">Living optic fibres bypass the retina’s incompetent design</a></p><p>Many mammals have evolved eyes that can see in the dark. That involves more than just becoming bigger. Their eyes have more light-sensitive rod cells, and these cells have changed at a microscopic level. They have converted the nucleus at the middle of each cell <a href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">into a light-collecting lens</a>.</p>
<p>In almost all complex cells, DNA is tightly packed around the edge of the nucleus but lightly packed towards its middle. But in the rod cells of nocturnal mammals, it’s the other way round. This inverted arrangement collects light that hits the rod cells and funnels it through to the retina underneath. By moving its DNA around, each cell has become a little optic fibre.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Nocturnal mammals see in dark by turning displaced DNA into lenses" href="http://blogs.discovermagazine.com/notrocketscience/2009/04/21/nocturnal-mammals-see-in-dark-by-turning-displaced-dna-into-lenses/">Nocturnal mammals see in dark by turning displaced DNA into lenses</a></p><p>Like many species that live in perpetual darkness, the <a href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">blind cavefish has lost its eyes</a>. These fish have evolved from sighted ancestors <a href="http://blogs.discovermagazine.com/notrocketscience/2011/04/07/sleepless-in-mexico-%E2%80%93-three-cavefish-groups-independently-evolved-to-lose-sleep/">on several occasions in</a> different Mexican caves. Their eyes have degenerated over a million years of darkness, but their blindness can be easily reversed by a spot of clever breeding. Many genes govern the development of eyes, and different populations of cavefish have lost their vision by disrupting different eye genes. By breeding individuals from different caves, working genes from one parent can compensate for broken ones from another. The result: babies that can see. (<em>Photo by <a href="http://www.flickr.com/photos/skippy/75380086/sizes/z/in/photostream/">skpy</a></em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Cross-breeding restores sight to blind cavefish" href="http://blogs.discovermagazine.com/notrocketscience/2010/10/05/cross-breeding-restores-sight-to-blind-cavefish/">Cross-breeding restores sight to blind cavefish</a></p><p>As babies, flatfishes like plaice and flounders look like every other fish. But as they grow up, one of their eyes moves to the other side of their heads. This allows the adults to lie flat on their sides without getting an eyeful of sand. The evolution of these grotesque fish is <a href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">beautifully captured by a fossil called Heteronectes</a>. It’s a half-committed flatfish. One of its eyes has begun migrating to the other side of its head but hasn’t made it all the way – it stops at the midline. We couldn’t have wished for a better intermediate form – it’s half-way between the standard fish body plan and the distorted visages of flounders and soles.</p>
<p><strong>Read more: </strong><a title="Permanent Link: Early flatfish has eye that’s moved halfway across its head" href="http://blogs.discovermagazine.com/notrocketscience/2008/07/09/early-flatfish-has-eye-thats-moved-halfway-across-its-head/">Early flatfish has eye that’s moved halfway across its head</a></p><p>The Hawaiian bobtail squid creates its own light, using special organs filled with glowing bacteria. But these organs don’t just produce light – <a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">they sense it too</a>. They are loaded with proteins that can detect light, and they produce nervous signals in bright conditions. They can expand and contract like an iris to control how much light gets through. They’re covered with a thick, transparent tissue that acts like a “lens”. The light organs are effectively an extra set of primitive eyes. They are living, ‘seeing’ flashlights. (<strong><em><span style="font-family: &quot;Calibri&quot;,&quot;sans-serif&quot;; font-weight: normal;">Image by </span></em></strong><em>William Ormerod</em>)</p>
<p><strong>Read more: </strong><a title="Permanent Link: Glowing squid use bacterial flashlights that double as an extra pair of “eyes”" href="http://blogs.discovermagazine.com/notrocketscience/2009/06/02/glowing-squid-use-bacterial-flashlights-that-double-as-an-extra-pair-of-eyes/">Glowing squid use bacterial flashlights that double as an extra pair of “eyes”</a></p>
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May 2nd, 2011 by Ed Yong in Animal behaviour, Animal senses, Animals, Echinoderms, Evolution, Eye evolution, Invertebrates | 7 comments | RSS feed | Trackback >

7 Responses to “Sea urchins use their entire body as an eye”

  1. 1.   Julia Says:
    May 2nd, 2011 at 3:29 pm

    A great example of nature’s craziness. One small thing though, I found a typo:

    “Through this network, the sea urchin *detects can react* to light, which it spots with its hundreds of feet.”

  2. 2.   Matt B. Says:
    May 2nd, 2011 at 6:59 pm

    Ed, since text can be attached to the pictures in these slide shows, I wonder if there can be a text slide without a picture. If so, you wouldn’t be limited to using slide shows only when there are pictures.

  3. 3.   Brian Too Says:
    May 2nd, 2011 at 8:17 pm

    Eye am the mighty all-seaing urchin, fear me!!

    Sidle sidle sidle.

  4. 4.   Lucas Says:
    May 3rd, 2011 at 6:35 am

    Hi Ed, fascinating news and great story – as always! This maybe worth to mention: earlier this year a similar (essentially the same) story was published in Roy Proc Soc. Same approach, same results, different sea urchin. Cheers!

  5. 5.   Daniel Says:
    May 3rd, 2011 at 4:13 pm

    Fascinating story. I have always loved echinoderms of all kinds. Next time I’m on a night dive, I’ll test this concept and see if they really do move away from light.

  6. 6.   Michael Meadon Says:
    May 4th, 2011 at 6:24 am

    This is absurdly wonderful – and a great write-up. Am submitting it to Dawkins’ site.

  7. 7.   DrivethruScientist Says:
    May 11th, 2011 at 10:59 am

    Having just come from the Developmental Biology: Sea Urchin 20 Conference, I can say that there are quite a few teams that are doing work like this in sea urchin. While light-sensing is one of the subgroups of study, there are other labs getting into circadian rhythm. From microarray and transcriptome data they’re finding many analogues to clock and period genes as well as daily rhythmicity in them. They also seem to share a mix of deuterostome and protostome genes in their regulation pathways.

    On another note, there’s someone even looking into hormones and neuropeptides in urchins. They seem to express, at different points in development, neuropeptides like gonadotropin-releasing hormone among others.

    It’s becoming a very interesting model animal to use!

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